Discussions

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  Correlation Heatmap for top 20 taxa (Genus/Species)

  msh-04 started May 19, 2025 in General

  

  

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  R 4.5 and dist_permanova: Error in gsub - NA in coercion to boolean

  Tokyovveight asked May 7, 2025 in Q&A · Answered

  

  

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  How to make composition barplots of focusing on one interesting taxon

  16svale asked May 6, 2025 in Q&A · Unanswered

  

  

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  Remove taxa loading vector RDA

  16svale asked May 7, 2025 in Q&A · Answered

  

  

  

  

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  How to change the taxonomy string in a phyloseq object?

  IrshadUlHaq1 started Mar 21, 2025 in General

  

  

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  n_taxa function in comp_barplot

  luigallucci asked Mar 19, 2025 in Q&A · Unanswered

  

  

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  tax_fix not resolving 'uncultured rumen bacterium 1-4'

  DomFS1506 started Nov 21, 2024 in General

  

  

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  Relative abundance from comp_barplot showed 10 instead of 1

  limkahkheng started Oct 29, 2024 in General

  

  

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  cor_heatmap questions

  emihoe started Jan 11, 2024 in General

  

  

  

  

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  Change levels for LM modeling in tax_tree

  scilexenko asked Aug 29, 2024 in Q&A · Unanswered

  

  

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  ps_filter by group?

  antoine4ucsd asked Jun 26, 2024 in Q&A · Unanswered

  

  

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  Questions about Labeling Options and Faceting in Compositional Barplots

  timz0605 started Jul 23, 2024 in General

  

  

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  How to omit taxa with unassigned or unwanted taxonomy in heatmap (or in figures generally)

  timz0605 started Jun 26, 2024 in General

  

  

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  comp_barplot reduce/remove space between axes and bars

  greboul asked Jun 12, 2024 in Q&A · Unanswered

  

  

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  Font choice and saving heatmaps with custom dimension

  timz0605 asked Jun 6, 2024 in Q&A · Unanswered

  

  

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  Can I make a correlation heatmap between taxa and categorical variable?

  timz0605 asked Jun 4, 2024 in Q&A · Unanswered

  

  

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  Taxa cannot be aggregated at any rank besides Phylum

  MCeciC asked May 31, 2024 in Q&A · Unanswered

  

  

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  Labelling samples in ord_plot PCoA

  we32i225 asked May 29, 2024 in Q&A · Answered

  

  

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  Tax_fix no non-unknown values

  luigallucci asked May 6, 2024 in Q&A · Unanswered

  

  

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  Cor_heatmap annotated

  mlkleinbest started May 8, 2024 in General

  

  

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  tax_level = "genus", but families are plotted as well

  Arvdputt asked Apr 27, 2024 in Q&A · Answered

  

  

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  Taxa cannot be aggregated at any rank

  Rolwar32 asked Mar 8, 2024 in Q&A · Answered

  

  

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  dominant taxa in each sample

  momodiame21 asked Mar 7, 2024 in Q&A · Unanswered

  

  

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  Need advice: labels for x-axis in comp_barplot() (calculate dominant taxon walkthrough)

  RachBioHaz asked Jan 26, 2024 in Q&A · Unanswered

  

  

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  Can't find function df_to_numeric_matrix

  HeatherDeel-USDA asked Oct 4, 2023 in Q&A · Closed · Answered

  

  

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