Skip to content

Update python version, update devcontainer #223

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 10 commits into from
Jun 11, 2025
Merged

Update python version, update devcontainer #223

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
10 commits
Select commit Hold shift + click to select a range
3b187cb
update: update params in test/tutorials
ttngu207 Jun 6, 2025
fd837ec
chore: update changelog
ttngu207 Jun 6, 2025
9391f97
chore: set up jupyter kernel in devcontainer
ttngu207 Jun 6, 2025
9d03efb
chore: update dockerfile
ttngu207 Jun 6, 2025
6fbf5d4
fix: fix devcontainer
ttngu207 Jun 6, 2025
f61416b
Update setup.py - supports python3.11
ttngu207 Jun 9, 2025
1cd35a9
fix: jupyter kernel
ttngu207 Jun 9, 2025
e2c03ba
fix: jupyter kernel
ttngu207 Jun 9, 2025
bac296b
chore: update si params in notebook
ttngu207 Jun 9, 2025
d5eb76f
chore: minor bugfix
ttngu207 Jun 9, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 9 additions & 5 deletions .devcontainer/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,10 +1,13 @@
FROM python:3.9-slim@sha256:5f0192a4f58a6ce99f732fe05e3b3d00f12ae62e183886bca3ebe3d202686c7f
ARG PY_VER=3.11
ARG DISTRO=bullseye
FROM mcr.microsoft.com/devcontainers/python:${PY_VER}-${DISTRO}

ENV PATH /usr/local/bin:$PATH
ENV PYTHON_VERSION 3.9.17
# Avoid warnings by switching to noninteractive
ENV DEBIAN_FRONTEND=noninteractive

USER root

RUN \
adduser --system --disabled-password --shell /bin/bash vscode && \
# install docker
apt-get update && \
apt-get install ca-certificates curl gnupg lsb-release -y && \
Expand Down Expand Up @@ -45,4 +48,5 @@ ENV EPHYS_ROOT_DATA_DIR /workspaces/element-array-ephys/example_data
ENV DATABASE_PREFIX neuro_

USER vscode
CMD bash -c "sudo rm /var/run/docker.pid; sudo dockerd"

CMD bash -c "sudo rm /var/run/docker.pid; sudo dockerd"
4 changes: 2 additions & 2 deletions .devcontainer/devcontainer.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -22,8 +22,8 @@
},
"vscode": {
"extensions": [
"ms-python.python@2023.8.0",
"ms-toolsai.jupyter@2023.3.1201040234"
"ms-python.python@2025.6.1",
"ms-toolsai.jupyter@2025.4.1"
]
}
}
Expand Down
5 changes: 5 additions & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,11 @@
Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
[Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.

## [0.4.4] - 2025-06-06

+ Update - Update params in test/tutorial
+ Fix - Moved KiloSort's template_features to additional_files

## [0.4.3] - 2025-06-03

+ Update - Use `Spikeinterface` official released versions (instead of install directly from source)
Expand Down
Loading