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Site list reordering based on an environment variable (quality of life improvement) #555

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Merged
merged 2 commits into from
Oct 3, 2024
Merged

Site list reordering based on an environment variable (quality of life improvement) #555

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c2e1484
Reorder the site list to move the environment variable specified site…
i-jey Oct 3, 2024
0f7ea22
Add instruction to OS_flash.md
i-jey Oct 3, 2024
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5 changes: 4 additions & 1 deletion OS_instructions/OS_flash.md
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Expand Up @@ -62,4 +62,7 @@ cp .bash_aliases /home/pi
The commands in the file can now be run from the terminal. At the time of writing (2022-12-09), the following commands are available:
- `lfm_run` - runs `oracle.py`
- `lfm_dev` - runs `dev_run.py`
- `send_address` - runs `email_utils.py` (attempts to send the ngrok address to `lfmscope@gmail.com`)
- `send_address` - runs `email_utils.py` (attempts to send the ngrok address to `lfmscope@gmail.com`)

### Setting a default location
- In `~/.bashrc` add the following environment variable at the bottom of the file: `DEFAULT_SITE='NAME_OF_SITE'`. Note: the specified site MUST already be listed in `ulc_mm_package/QtGUI/gui_constants.py`'s `SITE_LIST` constant.
9 changes: 8 additions & 1 deletion ulc_mm_package/QtGUI/gui_constants.py
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@@ -1,5 +1,5 @@
import enum

import os
from pathlib import Path

from ulc_mm_package.neural_nets.neural_network_constants import YOGO_CLASS_IDX_MAP
Expand Down Expand Up @@ -49,6 +49,13 @@ class ERROR_BEHAVIORS(enum.Enum):
"Goodlife Musanze",
]

# Reorder the site list to move the environment variable specified default site to the first location
env_var = os.getenv("DEFAULT_SITE")

if env_var in SITE_LIST:
SITE_LIST.insert(0, SITE_LIST.pop(SITE_LIST.index(env_var)))


CLINICAL_SAMPLE = "Whole blood (clinical, P. falciparum endemic)"
CULTURED_SAMPLE = "Lab cultured P. falciparum"
SAMPLE_LIST = [
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