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bfio
is currently blocking us from updating to Zarr V3 as referenced in #104 (comment)
Blocked until we bump waveorder:
ERROR: Cannot install None, biahub and biahub[dev]==0.1.0 because these package versions have conflicting dependencies.
The conflict is caused by:
biahub 0.1.0 depends on iohub<0.4 and >=0.3.0a2
biahub[dev] 0.1.0 depends on iohub<0.4 and >=0.3.0a2
waveorder 3.0.0a1 depends on iohub<0.3 and >=0.2
It looks like bfio
is only used by napari-psf-analysis
: (uv tree --package --invert bfio
)
bfio v2.4.8
└── napari-psf-analysis v1.1.3
└── biahub
Since are only using a small amount of features from napari-psf-analysis
such as:
napari_psf_analysis.psf_analysis.extract.BeadExtractor
napari_psf_analysis.psf_analysis.image.Calibrated3DImage
napari_psf_analysis.psf_analysis.psf.PSF
we could selectively vender the features we are actually using.
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