deepbiop-fq-v0.1.10

Added

• Update MSRV to 1.75.0

Other

• Update MSRV version in README and improve formatting

deepbiop-cli-v0.1.9

chore: Release package deepbiop-cli version 0.1.9

deepbiop-cli-v0.1.10

Added

• Update MSRV to 1.75.0
• Add new dependencies and CLI module for chimeric count
• Add deepbiop-cli package with dependencies
• Add support for processing BAM format in DeepBiop
• Add initial project files and configurations

Fixed

• Update env_logger to version 0.11.5
• Update badge URL for deepbiop crate

Other

• Update MSRV version in README and improve formatting
• Update description in Cargo.toml
• Remove unnecessary lines in Cargo.toml
• Update dependencies in Cargo.toml and set_up_threads in cli.rs
• Remove outdated documentation badge
• Add documentation badge to README.md
• Update badges in README.md to use consistent format
• Update README.md setup instructions
• Update README.md formatting
• Add tests for bam and fq modules
• Initial commit

deepbiop-bam-v0.1.9

Added

• Add functions to count chimeric reads in BAM files

Other

• Add documentation for chimeric and cigar operations
• Remove outdated documentation badge
• Add documentation badge to README.md

deepbiop-bam-v0.1.8

Added

• Add pyo3-stub-gen dependency and stub generation

Other

• Add example for parsing sa tag string
• Update deepbiop-fq crate to improve code organization and remove unused functions
• Update deepbiop-bam crate to include chimeric event struct and functions
• Add chimeric event struct and functions to deepbiop-bam crate
• Add function documentation for chimeric events
• Update badges in README.md to use consistent format

deepbiop-bam-v0.1.10

Added

• Update MSRV to 1.75.0

Other

• Update MSRV version in README and improve formatting

deepbiop-v0.1.7

Added

• Add support for processing BAM format in DeepBiop
• Add initial project files and configurations

Fixed

• Update badge URL for deepbiop crate

Other

• Update README.md formatting
• Update workspace dependencies in Cargo.toml
• Add tests for bam and fq modules
• Initial commit

deepbiop-utils-v0.1.7

Added

• Add derive_builder and deepbiop-utils dependencies

deepbiop-fq-v0.1.7

Added

• Add 'anyhow' feature to pyo3 dependency
• Add fastq to fasta conversion function

Other

• Remove unnecessary features from pyo3 dependencies
• Remove duplicate code for adding submodules
• Improve submodule registration method
• Add sub-module registration for deepbiop modules
• Update README.md setup instructions

deepbiop-bam-v0.1.7

Added

• Add new chimeric event example in documentation
• Add debug log for parsing SA tag
• Add chimeric read filtering and checking functions
• Add derive_builder and deepbiop-utils dependencies

Fixed

• Update import statement for logging module

Other

• Change name field in ChimericEvent to be an Option
• Rename functions for clarity and consistency
• Rename function filter_reads to keep_reads