deepbiop-bam-v0.1.13

Added

• Update keywords in Cargo.toml files
• (io) Refactor bam2fq function to handle equal seq and qual lengths
• Add BAM to fastq conversion functionality
• Add CLI installation guide

Other

• Remove unnecessary empty line
• Improve function and field comments
• Improve code readability and performance
• Merge branch 'dev'

deepbiop-v0.1.12

Added

• Add support for parsing FASTA files and functions

Other

• Update pre-commit hooks to use pre-commit stage

deepbiop-utils-v0.1.12

Added

• Add new modules for JSON and Parquet file I/O
• Add Display implementation for StructralVariantType and StructuralVariant
• Add support for parsing StructuralVariant from string
• Update dependencies versions and add new module

Fixed

• Update overlap conditions in genomic interval
• Update noodles and candle-core versions

Other

• Update fmt usage in sv.rs
• Add Eq trait to StructuralVariantType enum
• Add PartialEq trait to StructuralVariantType enum
• Add overlap tests for GenomicInterval

deepbiop-fq-v0.1.12

Added

• Update dependencies versions and add new module

deepbiop-fa-v0.1.12

Added

• Add new modules for JSON and Parquet file I/O
• Add new RNA sequences to test data
• Add initial implementation of deepbiop-fa
• Add CLI installation guide
• Update MSRV to 1.75.0
• Add support for processing BAM format in DeepBiop
• Add initial project files and configurations

Fixed

• Update Minimum Supported Rust Version to 1.82.0
• Update badge URL for deepbiop crate

Other

• Update Python object extraction to remove unnecessary variable
• Remove unnecessary file cleanup in test case
• Update function names and use in code
• Update deepbiop-fa crate documentation
• Update file paths in test and Cargo.toml
• Update MSRV version in README and improve formatting
• Remove outdated documentation badge
• Add documentation badge to README.md
• Update badges in README.md to use consistent format
• Update README.md setup instructions
• Update README.md formatting
• Add tests for bam and fq modules
• Initial commit

deepbiop-cli-v0.1.12

Added

• Add FaToFq command for fastq to fasta conversion
• Update keywords in Cargo.toml files
• (io) Refactor bam2fq function to handle equal seq and qual lengths
• Add support for writing compressed fastq files
• Add fastq to fasta conversion command
• Add new file fq2fa.rs
• Add BAM to fastq conversion functionality
• Add CLI installation guide

Other

• Improve file variable names in FqToFa struct
• Remove unnecessary empty line
• Improve function and field comments
• Refactor file_path assignment in bam2fq.rs
• Merge branch 'dev'

deepbiop-bam-v0.1.12

Added

• Update keywords in Cargo.toml files
• (io) Refactor bam2fq function to handle equal seq and qual lengths
• Add BAM to fastq conversion functionality
• Add CLI installation guide

Other

• Remove unnecessary empty line
• Improve function and field comments
• Improve code readability and performance
• Merge branch 'dev'

deepbiop-cli-v0.1.11

Added

• Add FaToFq command for fastq to fasta conversion
• Update keywords in Cargo.toml files
• (io) Refactor bam2fq function to handle equal seq and qual lengths
• Add support for writing compressed fastq files
• Add fastq to fasta conversion command
• Add new file fq2fa.rs
• Add BAM to fastq conversion functionality
• Add CLI installation guide

Other

• Improve file variable names in FqToFa struct
• Remove unnecessary empty line
• Improve function and field comments
• Refactor file_path assignment in bam2fq.rs
• Merge branch 'dev'

deepbiop-v0.1.11

Added

• Update keywords in Cargo.toml files
• Add CLI installation guide

Other

• Merge branch 'dev'

deepbiop-utils-v0.1.11

Added

• Update keywords in Cargo.toml files
• Add CLI installation guide

Other

• Merge branch 'dev'