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  1. TIMEgermline TIMEgermline Public

    Reproducibility of "Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response"

    Jupyter Notebook 5

  2. Ploc Ploc Public

    Code for analysis of protein location as a determinant of neopeptide immunogenicity

    Jupyter Notebook 3

  3. CLAIM-scAEs CLAIM-scAEs Public

    A tutorial for using an autoencoder neural network model to create a visually interpretable latent space of single cell expression data.

    Jupyter Notebook 3 1

  4. PredictMEE PredictMEE Public

    This repository provides code related to our manuscript describing the use of NLP to infer missing metadata in the SRA

    Jupyter Notebook 2

  5. PSTP_bootcamp_2024 PSTP_bootcamp_2024 Public

    Materials for PSTP bootcamp

    2

  6. SCNA_score_analysis SCNA_score_analysis Public

    Code to reproduce analysis and figures from Xian et al.

    Jupyter Notebook 1

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