cartercompbio
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TIMEgermline
TIMEgermline PublicReproducibility of "Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response"
Jupyter Notebook 5
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CLAIM-scAEs
CLAIM-scAEs PublicA tutorial for using an autoencoder neural network model to create a visually interpretable latent space of single cell expression data.
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PredictMEE
PredictMEE PublicThis repository provides code related to our manuscript describing the use of NLP to infer missing metadata in the SRA
Jupyter Notebook 2
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SCNA_score_analysis
SCNA_score_analysis PublicCode to reproduce analysis and figures from Xian et al.
Jupyter Notebook 1
Repositories
- 2025-MSTP-Bioinformatics-Bootcamp Public
Syllabus and materials for the 2025 MSTP Bioinformatics Bootcamp
cartercompbio/2025-MSTP-Bioinformatics-Bootcamp’s past year of commit activity - NeoPrecis Public
NeoPrecis is an advanced tool designed to enhance cancer immunotherapy by accurately predicting neoantigens
cartercompbio/NeoPrecis’s past year of commit activity - MelMHC Public
Bruce AI-MHC-Ighty: Code and data needed to reproduce the analyses by Talwar et al. from "Autoimmune Alleles at the Major Histocompatibility Locus Modify Melanoma Susceptibility"
cartercompbio/MelMHC’s past year of commit activity - TIMEgermline Public
Reproducibility of "Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response"
cartercompbio/TIMEgermline’s past year of commit activity
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