The Carpenter–Singh Lab, located at the Broad Institute of MIT and Harvard, is committed to unlocking the hidden potential of cell images through advanced computational techniques. Our mission is to revolutionize the process of identifying disease targets and therapies, ultimately contributing to a brighter future for medicine and human health.
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2022_Haghighi_NatureMethods
2022_Haghighi_NatureMethods PublicHigh-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
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2023_Cimini_NatureProtocols
2023_Cimini_NatureProtocols PublicOptimizing the Cell Painting assay for image-based profiling
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2023_Arevalo_NatComm_BatchCorrection
2023_Arevalo_NatComm_BatchCorrection PublicEvaluating batch correction methods for image-based cell profiling
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2024_vanDijk_PLoS_CytoSummaryNet
2024_vanDijk_PLoS_CytoSummaryNet PublicCytoSummaryNet learns an optimal way to aggregate single-cell features into population-level profiles
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2022_Rohban_CellSystems
2022_Rohban_CellSystems PublicVirtual screening for small-molecule pathway regulators by image-profile matching
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- 2024_vanDijk_PLoS_CytoSummaryNet Public
CytoSummaryNet learns an optimal way to aggregate single-cell features into population-level profiles
carpenter-singh-lab/2024_vanDijk_PLoS_CytoSummaryNet’s past year of commit activity - 2023_Haghighi_IJCAI Public
Pseudo-Labeling Enhanced by Privileged Information and its application to In Situ Sequencing Images
carpenter-singh-lab/2023_Haghighi_IJCAI’s past year of commit activity - 2025_Kalinin_mAP Public
A versatile information retrieval framework for evaluating profile strength and similarity (Nat Comms, 2025)
carpenter-singh-lab/2025_Kalinin_mAP’s past year of commit activity - InfoAlign Public Forked from liugangcode/InfoAlign
The code for "Learning Molecular Representation in a Cell"
carpenter-singh-lab/InfoAlign’s past year of commit activity - 2024_Arevalo_NeurIPS_MotiVE Public
carpenter-singh-lab/2024_Arevalo_NeurIPS_MotiVE’s past year of commit activity - 2022_Haghighi_NatureMethods Public
High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
carpenter-singh-lab/2022_Haghighi_NatureMethods’s past year of commit activity - 2024_Iyer_Genemod Public
carpenter-singh-lab/2024_Iyer_Genemod’s past year of commit activity - 2023_Arevalo_NatComm_BatchCorrection Public
Evaluating batch correction methods for image-based cell profiling
carpenter-singh-lab/2023_Arevalo_NatComm_BatchCorrection’s past year of commit activity - 2022_Rohban_CellSystems Public
Virtual screening for small-molecule pathway regulators by image-profile matching
carpenter-singh-lab/2022_Rohban_CellSystems’s past year of commit activity
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