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Increase clinical_event.EVENT_TYPE size from 20 to 50 characters #11752

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Merged
merged 1 commit into from
Oct 16, 2025
Merged

Increase clinical_event.EVENT_TYPE size from 20 to 50 characters #11752

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2 changes: 1 addition & 1 deletion pom.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@
<frontend.artifactId>frontend-cbioportal</frontend.artifactId>
<frontend.version>v6.3.7</frontend.version>
<!-- THIS SHOULD BE KEPT IN SYNC TO VERSION IN CGDS.SQL -->
<db.version>2.14.3</db.version>
<db.version>2.14.4</db.version>
<derived_table.version>1.0.2</derived_table.version>

<!-- Version properties for dependencies that should have same version. -->
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4 changes: 2 additions & 2 deletions src/main/resources/db-scripts/cgds.sql
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Expand Up @@ -637,7 +637,7 @@ CREATE TABLE `clinical_event` (
`PATIENT_ID` int(11) NOT NULL,
`START_DATE` int NOT NULL,
`STOP_DATE` int,
`EVENT_TYPE` varchar(20) NOT NULL,
`EVENT_TYPE` varchar(50) NOT NULL,
PRIMARY KEY (`CLINICAL_EVENT_ID`),
KEY (`PATIENT_ID`,`EVENT_TYPE`),
FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE
Expand Down Expand Up @@ -743,4 +743,4 @@ CREATE TABLE `resource_study` (

-- DB_SCHEMA_VERSION AND DERIVED_TABLE_SCHEMA_VERSION MUST BE KEPT IN SYNC WITH THE db.version AND derived_table.version PROPERTIES IN pom.xml
INSERT INTO `info` (`DB_SCHEMA_VERSION`, `GENESET_VERSION`, `DERIVED_TABLE_SCHEMA_VERSION`)
VALUES ('2.14.3', NULL, '1.0.2');
VALUES ('2.14.4', NULL, '1.0.2');
5 changes: 5 additions & 0 deletions src/main/resources/db-scripts/migration.sql
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Expand Up @@ -1078,3 +1078,8 @@ UPDATE `info` SET `DB_SCHEMA_VERSION`="2.14.2";
##version: 2.14.3
DROP TABLE IF EXISTS `cosmic_mutation`;
UPDATE `info` SET `DB_SCHEMA_VERSION`="2.14.3";

##version: 2.14.4
-- increase varchar size to accomodate larger event type names
ALTER TABLE `clinical_event` MODIFY COLUMN `EVENT_TYPE` varchar(50) NOT NULL;
UPDATE `info` SET `DB_SCHEMA_VERSION`="2.14.4";
4 changes: 2 additions & 2 deletions src/test/resources/cgds-h2.sql
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Expand Up @@ -633,7 +633,7 @@ CREATE TABLE `clinical_event` (
`PATIENT_ID` int(11) NOT NULL,
`START_DATE` int NOT NULL,
`STOP_DATE` int,
`EVENT_TYPE` varchar(20) NOT NULL,
`EVENT_TYPE` varchar(50) NOT NULL,
PRIMARY KEY (`CLINICAL_EVENT_ID`),
KEY (`PATIENT_ID`, `EVENT_TYPE`),
FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE
Expand Down Expand Up @@ -737,4 +737,4 @@ CREATE TABLE `resource_study` (

-- DB_SCHEMA_VERSION AND DERIVED_TABLE_SCHEMA_VERSION MUST BE KEPT IN SYNC WITH THE db.version AND derived_table.version PROPERTIES IN pom.xml
INSERT INTO `info` (`DB_SCHEMA_VERSION`, `GENESET_VERSION`, `DERIVED_TABLE_SCHEMA_VERSION`)
VALUES ('2.14.3', NULL, '1.0.0');
VALUES ('2.14.4', NULL, '1.0.0');
4 changes: 2 additions & 2 deletions src/test/resources/cgds.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -633,7 +633,7 @@ CREATE TABLE `clinical_event` (
`PATIENT_ID` int(11) NOT NULL,
`START_DATE` int NOT NULL,
`STOP_DATE` int,
`EVENT_TYPE` varchar(20) NOT NULL,
`EVENT_TYPE` varchar(50) NOT NULL,
PRIMARY KEY (`CLINICAL_EVENT_ID`),
KEY (`PATIENT_ID`, `EVENT_TYPE`),
FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE
Expand Down Expand Up @@ -737,4 +737,4 @@ CREATE TABLE `resource_study` (

-- DB_SCHEMA_VERSION AND DERIVED_TABLE_SCHEMA_VERSION MUST BE KEPT IN SYNC WITH THE db.version AND derived_table.version PROPERTIES IN pom.xml
INSERT INTO `info` (`DB_SCHEMA_VERSION`, `GENESET_VERSION`, `DERIVED_TABLE_SCHEMA_VERSION`)
VALUES ('2.14.3', NULL, '1.0.0');
VALUES ('2.14.4', NULL, '1.0.0');
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