Skip to content

order genomic_event_derived table by study id first #11730

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 3 commits into
base: demo-clickhouse-only-db
Choose a base branch
from
Open

order genomic_event_derived table by study id first #11730

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
bfdf110
Frontend v6.3.7
invalid-email-address Oct 6, 2025
f959da2
Prepare for v6.3.8
zainasir Oct 6, 2025
2f9e7b2
order genomic_event_derived table by study id first
onursumer Oct 2, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions pom.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@

<groupId>io.github.cbioportal</groupId>
<artifactId>cbioportal</artifactId>
<version>v6.3.7-SNAPSHOT</version>
<version>v6.3.8-SNAPSHOT</version>
<packaging>jar</packaging>
<description>cBioPortal for Cancer Genomics</description>

Expand All @@ -28,7 +28,7 @@
<!-- TODO replace with version of cbioportal frontend with compatible login url-->
<frontend.groupId>io.github.cbioportal</frontend.groupId>
<frontend.artifactId>frontend-cbioportal</frontend.artifactId>
<frontend.version>v6.3.6</frontend.version>
<frontend.version>v6.3.7</frontend.version>
<!-- THIS SHOULD BE KEPT IN SYNC TO VERSION IN CGDS.SQL -->
<db.version>2.14.2</db.version>
<derived_table.version>1.0.2</derived_table.version>
Expand Down
2 changes: 1 addition & 1 deletion src/main/resources/db-scripts/clickhouse/clickhouse.sql
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -173,7 +173,7 @@ CREATE TABLE IF NOT EXISTS genomic_event_derived
patient_unique_id String,
off_panel Boolean DEFAULT FALSE
) ENGINE = MergeTree
ORDER BY (variant_type, entrez_gene_id, hugo_gene_symbol, genetic_profile_stable_id, sample_unique_id);
ORDER BY (cancer_study_identifier, variant_type, entrez_gene_id, hugo_gene_symbol, genetic_profile_stable_id, sample_unique_id);

INSERT INTO genomic_event_derived
-- Insert Mutations
Expand Down