v5.3.5

🐛 Bug Fixes

• Filter SV by custom driver annotations in oncoprint and study page @BasLee (#4552)
• Fix oncokb card for intragenic gene in mutation table @alisman (#4594)
• 🐛 Add Missing Operations Button Txt to Clinical Event Type Table @haynescd (#4592)

🎨 Style Tweaks

• Tweak style of oncoprint controls @aditygrg2 (#4548)

🧰 Maintenance

• Update api clients @alisman (#4591)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.4...v5.3.5
• Frontend: v5.3.4...v5.3.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.4

🧬 Enhancements

• Impl. study search on Query Page using 'study tags' @BasLee (#4571)
• Improve Oncoprint Add-track UI @aditygrg2 (#4542)

🐛 Bug Fixes

• Hide defunct download tab on home page @gblaih (#4585)

🧰 Maintenance

• Update yarn lock file to fix build error @alisman (#4584)
• [Snyk] Security upgrade xml2js from 0.4.23 to 0.5.0 @oplantalech (#4578)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.3...v5.3.4
• Frontend: v5.3.3...v5.3.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.3

🧬 Features

• Disable autocommit and manually commit filters in study view @BasLee (#4502)

🐛 Bug Fixes

• Disable oncokb fetch from MutationMapper when show_oncokb config is off @alisman (#4572)

👷‍♀️ Testing, Configuration & Deployment

• Update circleci config to parametrize Workflow for e2e tests @haynescd (#4570)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.2...v5.3.3
• Frontend: v5.3.2...v5.3.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.2

🧬 Features

• Allow numeric data type for custom data charts @TJMKuijpers (#4533)

✨ Enhancements

• Update gene related search in Oncoprint and Plots tab @dippindots (#4517)
• Oql upstream downstream fusions in oncoprint @pvannierop (#4494)

🐛 Bug Fixes

• Apply oncokb configuration to patient page (where it was missing) @alisman (#4568)
• Fix showNA undefined for numerical data type @TJMKuijpers (#4562)

👷‍♀️ Testing, Configuration & Deployment

• Add screenshots and adjust waitForOncoprint @alisman (#4573)
• Fix localdb keycloak docker image issue @fuzhaoyuan (#4564)

🧰 Maintenance

• Update api clients and make associated changes @alisman (#4567)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.1...v5.3.2
• Frontend: v5.3.1...v5.3.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.1

✨ Enhancements

• ✨ Add Clinical Event Type Counts Table @haynescd (#4530)

🐛 Bug Fixes

• Fix driver/vus filter in badge selector for results and comparison @gblaih (#4559)
• 🐛 Update Freq Col Alignment in Timeline Event Availability Chart @haynescd (#4558)
• Selected genes list populates when there is only one group selected @jfkonecn (#4551)

👷‍♀️ Testing, Configuration & Deployment

• Fix and reduce flakiness in oncoprint tests @gblaih (#4560)
• Update screenshots after data change @alisman (#4557)
• Fix studyview e2e failure @alisman (#4555)
• Add compression in some GSVA tests @oplantalech (#4549)
• Don't do retries in cancer gene filter test @alisman (#4554)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.0...v5.3.1
• Frontend: v5.3.0...v5.3.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.0

🧬 Features

• Edit filter panel layout and group "Other" mutations into drivers and vus in comparison lollipop @gblaih (#4524)

✨ Enhancements

• Enable expression and protein data on multi-study when configurable condition is met @alisman (#4534)
• Pathway mapper followup issues @YusufZiyaOzgul (#4480)

👷‍♀️ Testing, Configuration & Deployment

• Fix LocalDB e2e StudyView Test @haynescd (#4550)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.11...v5.2.12
• Frontend: v5.2.11...v5.2.12

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.11

🧬 Features

• Support '::' structural variant notation in OQL @pvannierop (#4413)

🐛 Bug Fixes

• Patient view tooltip months numbers should be rounded @dubincorey (#4531)
• MSKTabs should not interpret tooltip clicks as clicks on tab buttons @jfkonecn (#4538)
• Right Aligned numbers in study view @aditygrg2 (#4539)

👷‍♀️ Testing, Configuration & Deployment

• Fix the localdb tests for ARM architecture macOS @fuzhaoyuan (#4535)

🧰 Maintenance

• Update API clients @alisman (#4543)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.10...v5.2.11
• Frontend: v5.2.10...v5.2.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.10

✨ Enhancements

• Show reference genome in study list @BasLee (#4407)
• Support Mutational Signatures for COSMIC v3 @TJMKuijpers (#4467)
• Do not display a default plot if the survival prefix table is initially empty @onursumer (#4511)

🐛 Bug Fixes

• Fix patient navigation bug @alisman (#4510)
• Handle empty body in registerRequestBodyCompression function @oplantalech (#4529)
• fix formatNumberValueInSignificantDigits function for bigger numbers @onursumer (#4525)

🎨 Style Tweaks

• #9925 Issue: Mass Spec label changed in dataset page @manik-dhanjal (#4526)

👷‍♀️ Testing, Configuration & Deployment

• Cleanup unused "user_email_address" variable @oplantalech (#4532)

🧰 Maintenance

• Cleanup unused "user_email_address" variable @oplantalech (#4532)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.9...v5.2.10
• Frontend: v5.2.9...v5.2.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.9

✨ Enhancements

• Rename 'user email' variables to 'user display name' for consistency @oplantalech (#4498)

🐛 Bug Fixes

• Fix the tooltip text not wrapping @fuzhaoyuan (#4518)
• Remove fusions from group comparison lollipop plot @gblaih (#4515)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots and api client @alisman (#4516)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.8...v5.2.9
• Frontend: v5.2.8...v5.2.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.8

✨ Enhancements

• Add link to study view to view a group of comparison view @alisman (#4514)
• Revamp filter panel format and add only functionality in comparison lollipop @gblaih (#4497)

🎨 Style Tweaks

• Update Treatment Filters to wrap groupLogic wrapper with parent to ho… @haynescd (#4512)

👷‍♀️ Testing, Configuration & Deployment

• Fix localdb bootup (on local linux machines) @alisman (#4513)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.7...v5.2.8
• Frontend: v5.2.7...v5.2.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning