v6.3.0

✨ Enhancements

• Update legend with filtered categories in Plots tab @rishisulakhe (#5130)

🐛 Bug Fixes

• Fixes 11541. Enrichments service should only return items where a ge… @alisman (#5190)

👷‍♀️ Testing, Configuration & Deployment

• Filter out genes subject to off-panel issue in validator @alisman (#5197)
• Fix failing screenshot tests for results view mutations table oncokb annotation @gblaih (#5195)
• Increase timeout for group comparison clinical tab categorical table screenshot test @onursumer (#5189)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.2.2...v6.3.0
• Frontend: v6.2.2...v6.3.0

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.2.2

✨ Enhancements

• Add aria-label attribute to fix the button name-related 508 issues @johnyesit (#5187)
• feat : Use of path URL for comparison and pathways subtab @rishisulakhe (#5162)
• Add alt attribute to fix the image-alt-related 508 issues @johnyesit (#5183)
• Add aria-label attribute to fix the link-name-related and the select-name-related 508 issues @johnyesit (#5182)
• Add tabIndex attribute to fix the scrollable-region-focus-related 508 issues and add aria-label attribute to some of the input fields to fix the label-related 508 issues @johnyesit (#5171)

🐛 Bug Fixes

• Fix comparison page category table numbers @onursumer (#5184)

🎨 Style Tweaks

• Change NA to Not Profiled in gene-specific CNA chart @lllinging (#5135)

👷‍♀️ Testing, Configuration & Deployment

• Update patient table screenshot @gblaih (#5181)
• Revert study view screenshots affected by frequency change @gblaih (#5180)
• Enable validation for the new alteration enrichments and samples endpoints @onursumer (#5176)

🧰 Maintenance

• Temporarily disable 3D Structure viewer @onursumer (#5186)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.2.1...v6.2.2
• Frontend: v6.2.1...v6.2.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.2.1

✨ Enhancements

• Allow clickhousifying of the public API client @onursumer (#5120)

🐛 Bug Fixes

• Enable table search for genomic start and end positions @onursumer (#5168)
• Fix issue parsing custom data input @alisman (#5165)
• Hide pie button if user unauthorized @FlorisVleugels (#5164)
• Fix prettier version for circleci config @onursumer (#5170)

📘 Documentation

• Add link to new about page @inodb (#5160)
• Update Visualize.tsx to include SE4BIO @pieterlukasse (#5163)

👷‍♀️ Testing, Configuration & Deployment

• Update url navigation to fix failing e2e localdb tests on backend and restore localdb errors screenshots @gblaih (#5175)
• Fix prettier version for circleci config @onursumer (#5170)
• Revert test changes affected by frequency fix @gblaih (#5169)
• Stabilize flaky unprofiled samples oncoprint and breadcrumbs tests @gblaih (#5161)
• Improve prettier check in circleci tests @zainasir (#5166)
• Fix e2e localdb oncoprint don't cluster test @gblaih (#5159)
• Stabilize gsva plots tab geneset selection test @gblaih (#5158)
• Stabilize clicking query by gene tests @gblaih (#5157)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.2.0...v6.2.1
• Frontend: v6.2.0...v6.2.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.2.0

🧬 Features

• Pairwise plots @sowmiyaa-kumar (#5148)

🎨 Style Tweaks

• remove quick search beta @inodb (#5150)

👷‍♀️ Testing, Configuration & Deployment

• Replace Github Packages with Maven Central @zainasir (#5156)
• Migration of localdb tests to async @gblaih (#5143)
• Stabilize query page reference genome test @gblaih (#5155)
• Fix e2e remote quick search test @gblaih (#5151)
• Screenshot updates for pairwise feature on plots tab @alisman (#5149)
• Localdb screenshot tracking fix testing @gblaih (#5146)

🧰 Maintenance

• Revert "Fix CDSA iframe url" @dippindots (#5154)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.1.0...v6.1.1
• Frontend: v6.1.0...v6.1.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.1.0

✨ Enhancements

• Add aria-labels to buttons on query page @alisman (#5142)
• Improve layout of cancer summary page @gblaih (#5133)

👷‍♀️ Testing, Configuration & Deployment

• Replace Jitpack with Github Packages @zainasir (#5128)
• Fix broken studyview e2e remote tests @gblaih (#5139)
• Fix screenshot tracking in circleci localdb tests @zainasir (#5127)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.28...v6.0.29
• Frontend: v6.0.28...v6.0.29

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.28

✨ Enhancements

• feat : Added boxplot stats as tooltip for axis label @rishisulakhe (#5125)
• Add sample and patient counts toggle for cancer summary chart tooltip @gblaih (#5110)
• Add last updated time and embolden exact matches in cosmic column in mutations table @gblaih (#5103)

🐛 Bug Fixes

• Remove NA label when NA=0 in filter chart @lllinging (#5126)
• Fix the option to configure default view oncoprint @TJMKuijpers (#5117)
• Improve loading behavior of charts on results comparison alterations tab @gblaih (#5114)

👷‍♀️ Testing, Configuration & Deployment

• Fix e2e localdb results comparison alteration tests @gblaih (#5121)
• Fix flaky e2e remote tests @gblaih (#5119)
• Fix broken annotation filter localdb tests @gblaih (#5107)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.27...v6.0.28
• Frontend: v6.0.27...v6.0.28

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.27

🧹 Cleanup & Refactoring 🔧

• Update logo image and add brand assets folder @alisman (#5113)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.26...v6.0.27
• Frontend: v6.0.26...v6.0.27

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.26

✨ Enhancements

• Expand tooltip target for boxplot @alisman (#5112)
• Add table visualisation for categorical values @pozhidaevak (#5012)

🐛 Bug Fixes

• Fix CDSA iframe url @alisman (#5111)
• Fix comparison mutations tab not loading when no mutations selected @gblaih (#5090)
• Timeline: hide superfluous drag-to-zoom button when zooming is disabled @FilledEther20 (#5096)
• Fix compare button for treatment tables on study view @gblaih (#5097)

👷‍♀️ Testing, Configuration & Deployment

• Fix local e2e @alisman (#5102)
• Fix flaky test when inputting geneset @gblaih (#5101)
• Refactor localdb tests @inodb (#5078)
• Fix broken remote e2e tests @gblaih (#5100)
• E2E: fix element selection for home.spec.test @alisman (#5098)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.25...v6.0.26
• Frontend: v6.0.25...v6.0.26

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.25

🧬 Features

• Add Stacked Bar Chart and sorting to Plots Tab @SURAJ-SHARMA27 (#4960)

✨ Enhancements

• hide timeline events availability chart by default @ShahKirtan2003 (#5066)

🐛 Bug Fixes

• Mutation tab: Handle missing functional impact data from GN gracefully @alisman (#5092)
• Revert temp clinical data value casing workaround @onursumer (#5074)

👷‍♀️ Testing, Configuration & Deployment

• Update e2e tests after hiding of default timeline events availability… @alisman (#5094)
• Fix e2e @alisman (#5091)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.24...v6.0.25
• Frontend: v6.0.24...v6.0.25

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.24

✨ Enhancements

• Clindata filter follow up @fuzhaoyuan (#4909)
• Improve Homepage Search: Automatically Hide Dropdown on Typing @GarvitDadheech (#4953)
• Defer loading of gene panel data until plots tab is shown @alisman (#5087)
• Add truncation of timeline label @jCHENEBY (#4990)

🐛 Bug Fixes

• Fix sv tab genome nexus client @fuzhaoyuan (#5045)
• On Study View sort structural variant table by sample count @alisman (#5046)
• Update function logScalePossible for generic assay negative data @TJMKuijpers (#5084)
• Bugfix/hide empty tab @Nelliney (#4969)
• Fix log scale breaking box plot in plots tab @gblaih (#5079)

🏎 Performance Tweaks

• Reduce api calls for generic assay meta in study view page @dippindots (#5019)

🧹 Cleanup & Refactoring 🔧

• Removed Heroku references @thepiyush-303 (#5088)

👷‍♀️ Testing, Configuration & Deployment

• fixes e2e tests to use CANCER_TYPE rather than tumor type @rishisulakhe (#5077)
• Update screenshots for timeline @alisman (#5085)
• Fix screenshots. Update test. Update api clients @alisman (#5081)
• fix localdb servdist @alisman (#5080)
• update screenshost after gene table update @inodb (#5076)

🧰 Maintenance

• Update api client @dippindots (#5082)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.23...v6.0.24
• Frontend: v6.0.23...v6.0.24

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning