XLRanker is a tool to rank and prioritize protein to protein cross linking data. The tool uses parsimonious selection as well as an XGBoost model to select the best protein pairs to represent ambiguous peptides.
You can install xlranker using pip:
pip install xlrankerTo analyze a TSV file containing a network of peptide sequences run:
xlranker start peptide_network.tsv
Please view the documentation for detailed usage instructions and examples.
For a quick start, you can check out the example notebook in the notebooks directory or launch a google colab notebook to see how to use the package interactively.