If you have questions about anything we talk about here, come to our office hours (https://events.brown.edu/ccv/). In addition to the general Oscar office hours, you are also welcome to come by the Computational Biology Core office hours. Even if you aren't a biologist, we can probably help you with your R code.
If you want to try to use the container I used to make this workshop, you can do that using Open On Demand:
- Go to ood.ccv.brown.edu and log in with your credentials.
- On the landing page select the RStudio on Singularity app.
- Fill in the following fields and leave the other fields empty
- Number of Hours: 48
- Num Cores: 4
- Memory: 16
- Singularity Container Path:
/gpfs/data/shared/databases/workshops/reproducibility_r/reproducibility_r.sif - Path for R Executable:
~/bin/R
It should look like the two images below.
If it seems like it is taking too long, you can change Number of Hours to 1 for the purposes of following along with this workshop.
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Select Launch. The session will now be queued. You will be brought to your interactive sessions dashboard.
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When the session is ready a Connect to RStudio Server button will appear (see image below). Click this button to launch your instance.
