add stricter AF prefilter option #882
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This expands the AF pre-filter table to include another bucket of variants, with an AF between 0.001 and 0.01. This allows us to more strictly prefilter the entries table on searches (like the AIP search) with stricter AF criteria than locus criteria
I am not sure exactly what would have to be run in order to generate this new table, let me know if I need to write anything else to assist with that