main into dev #880
Merged
main into dev #880
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* New pipeline runner image. (#841) * Push * This works! * cleanup * lint * lint * Tweak spark config location * add dockerignore * vep bumps * Finish download * lines * correct path * bump vep version * path updates * Add reference genome to path * rename to REFERENCE_GENOME * refactor yet again * Finish * cleanup * redo reference data * more refactoring * more refactor * bump * absolute path * Fix var * default back to /vep_data * rearrange vep data * lint * small tweaks * rename * Benb/rg38 locus (#864) * rg38 locus * fix property * lint * update test * ruff * Fix test * empty release commit * a few bugs * fix config * Fix vep_data * fix bin * change up args again * ignore warnings * ht instead of mt * use contains instead of index * Fix bad commit
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.