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Merged
merged 12 commits into from
Aug 15, 2024
Merged

Dev #873

merged 12 commits into from
Aug 15, 2024

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bpblanken
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bpblanken and others added 12 commits August 14, 2024 13:04
* Push

* This works!

* cleanup

* lint

* lint

* Tweak spark config location

* add dockerignore

* vep bumps

* Finish download

* lines

* correct path

* bump vep version

* path updates

* Add reference genome to path

* rename to REFERENCE_GENOME

* refactor yet again

* Finish

* cleanup

* redo reference data

* more refactoring

* more refactor

* bump

* absolute path

* Fix var

* default back to /vep_data

* rearrange vep data

* lint

* small tweaks

* rename

* Benb/rg38 locus (#864)

* rg38 locus

* fix property

* lint

* update test

* ruff

* Fix test
@bpblanken bpblanken marked this pull request as ready for review August 15, 2024 22:35
@bpblanken bpblanken requested a review from a team as a code owner August 15, 2024 22:35
@bpblanken bpblanken merged commit 22d9067 into main Aug 15, 2024
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