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Merged
merged 3 commits into from
Jul 8, 2024
Merged

Dev #833

merged 3 commits into from
Jul 8, 2024

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bpblanken
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bpblanken and others added 3 commits June 28, 2024 12:18
* Remove concept of private crdqs

* lint

* fix logic

* Move SampleType out of BaseHailTableTask

* cleanup

* fix

* missed a few!

* shitshow

* First one?

* flip order here

* flip order

* flip order

* try sharing these params?

* that failed :/

* more scaffolding

* ruff

* Another one

* more hacking

* Fix write metadata

* typo

* missing param

* typo

* making progress

* format

* remove pairing

* another

* missing test liftover

* ruff

* ruff

* use predetermined filters/imputed_sex paths

* ruff

* formalize

* lint

* lint

* Fix arg

* Change parameters again

* Update a bunch of args

* missed a few

* fix liftover

* ruff

* reformat filters annotation

* add env vars too!

* ruff

* ruff

* Fix logic

* add env mock

* Update environment.py

* update zip

* ruff
@bpblanken bpblanken requested a review from a team as a code owner July 8, 2024 20:02
@bpblanken bpblanken merged commit c113106 into main Jul 8, 2024
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