gnomad v4 sv migration #1048
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gnomad v4 sv migration #1048
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…te/seqr-loading-pipelines into benb/sv_gnomad_v4_migration
bpblanken
commented
Feb 20, 2025
| # bcftools annotate --rename-annots /var/seqr/remap /var/seqr/phase4.seqr.gnomad_v4_tmp.vcf.gz | bgzip > /var/seqr/phase4.seqr.gnomad_v4.vcf.gz | ||
| # | ||
| # where remap contains "INFO/TRUTH_VID GNOMAD_V4.1_TRUTH_VID" | ||
| PHASE_4_CALLSET_WITH_GNOMAD_V4 = 'gs://seqr-loading-temp/phase4.seqr.gnomad_v4.vcf.gz' |
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This vcf serves as a mapping of variant id -> gnomad v4 id.
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should we put this in seqr-reference-data in case we ever need it again?
…s into benb/sv_gnomad_v4_migration
…s into benb/sv_gnomad_v4_migration
jklugherz
approved these changes
Feb 25, 2025
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