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Merged
merged 8 commits into from
Jan 7, 2025
Merged

Dev #1007

merged 8 commits into from
Jan 7, 2025

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bpblanken
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bpblanken and others added 8 commits December 13, 2024 09:41
* Add service account credentialing

* ruff
* Add service account credentialing

* ruff

* First pass

* tests passing

* add coverage of bigquery test

* change function names

* use generators everywhere

* bq requirement

* resolver

* Update sample id name

* Build Sex Check Table from TDR Metrics (#999)
* refactor: Move feature flags out of environment to their own dataclass

* lint: ruff

* ruff
…nt in the expected loadable samples (#1003)

* bugfix: exclude samples from relationship checking that are not present in the expected loadable samples

* cleanup
#1005)

* feat: add remap and family loading failures as validation exceptions rather than runtime errors

* move on

* Update write_remapped_and_subsetted_callset_test.py

* ruff
* Support gcs dirs in rsync

* ws

* Add create dataproc cluster task

* add dataproc

* ruff

* requirements

* still struggling

* Gencode refactor to remove gcs

* bump reqs

* Run dataproc job

* lib

* running

* merge requirements

* Flip'em

* Better exception handling

* Cleaner approach if less generalizable

* write a test

* Fix tests

* lint

* Add test for success

* refactor to use a base class... better for adding support for multiple jobs

* cleanup

* ruff

* Fix missing mock

* Fix flapping test

* pr comments
@bpblanken bpblanken requested a review from a team as a code owner January 7, 2025 15:53
@bpblanken bpblanken merged commit b975ab7 into main Jan 7, 2025
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