3.4.0

What's Changed

• Better error message for crosscheck when dictionary checks fail. by @yfarjoun in #1982
• Use use long instead of int in SamComparisonMetric and SamComparison by @gokalpcelik in #1985
• Update outdated links to HaplotypeMap file format by @lbergelson in #1988
• Fix failures to allocate arrays with a very large Java heap size by @EthanNelson-Moore in #1986
• Updating GH actions upload artifact v3 -> v4 by @lbergelson in #1993
• Make CollectSamErrorMetrics understand lowercased reference (and read) bases by @yfarjoun in #1995
• Fix documentation errors in HsMetrics by @yfarjoun in #1998
• Make MergeVcfs (more) deterministic by @kachulis in #2000
• Optionally extract all fingerprint snps by @yfarjoun in #1989
• New small tool for collecting the histogram of unique UMIs counts within duplicate sets by @yfarjoun in #1999
• Fix CollectHsMetricsTest to use doubles in certain comparisons by @lbergelson in #1997
• Update Htsjdk to 4.2.0 by @lbergelson in #2005

New Contributors

• @EthanNelson-Moore made their first contribution in #1986

Full Changelog: 3.3.0...3.4.0