Skip to content

v0.16
Compare
Choose a tag to compare
@kachulis kachulis released this 06 Dec 19:27
· 54 commits to main since this release
v0.16
a881f3b
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

What's Changed

  • Added a pipeline for phasing VCFs and benchmarking their performance with WhatsHap (#124)
  • New Utilities WDL: DownsampleAndCollectCoverage (#132)
  • Update .dockstore.yml to include Dipcall (#135)
  • Update for PRS on hg38 (#137)
  • New workflow: CompareBenchmarks and fixed repo CircleCI (#103)
  • Add combine summaries wf (#112)
  • Add error messages in R scripts rather than just quit for PRSWrapper (#141)
  • Update RTG docker for vcfeval to fix FORMAT filters ignored (#142)
  • vcfdist evaluation (#143)
  • Toggle benchmark vc fs fingerprint (#144)
  • Potential improvements regarding default thread numbers and disk sizes (#150)
  • Handle ploidy in chrX and chrY outside of the PAR region for benchmarking (#133)
  • Add utility for creating IGV session from list of bams, vcfs, intervals (#145)
  • Add utility for converting interval_list to bed efficiently (#154)
  • Rewrite SimpleBenchmark and merge for staging before replacing BenchmarkVCFs (#155)
  • Add MatchFingerprints utility WDL (#156)
  • Automatic Novelty Detection/Flagging from PCA plots (#157)
  • Add CMRG interval files to our docs (#158)
  • Add Glimpse2Imputation pipeline (#123)
  • Pandas deprecated DataFrame.append in PRS QC (#160)

Full Changelog: v0.15...v0.16

Assets 2
Loading