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broadinstitute / gatk Public

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Bundle support for FeatureInputs, references; add CreateBundle tool.#8944

Draft

cmnbroad wants to merge 12 commits intomasterbroadinstitute/gatk:masterfrom

cn_vcf_bundlesbroadinstitute/gatk:cn_vcf_bundlesCopy head branch name to clipboard

Conversation Commits12 (12)Checks Files changed

Commits

Commits on May 19, 2025

Add bundle support for FeatureInputs.
cmnbroad
committed
Add bundle support for references.
cmnbroad
committed
FIx up javadoc.
cmnbroad
committed
More text cleanup.
cmnbroad
committed
Use a temporary htsjdk snapshot until a release is ready.
cmnbroad
committed
Update comment.
cmnbroad
committed
Fix regression in testDuplicateSources test.
cmnbroad
committed
Include missing expected results file for SV testBundleRemoteWithQueryParams test.
cmnbroad
committed

Commits on May 27, 2025

Skip refence bundles in Spark tools.
cmnbroad
committed
Alternative method to suppress bundle tests in Spark tools.
cmnbroad
committed
Reorder test matrix message to make it useful.
cmnbroad
committed
Oh yeah do the docker tests too.
cmnbroad
committed

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