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WDL to create the participant mapping table [VS-1632] #5883

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WDL to create the participant mapping table [VS-1632]

WDL to create the participant mapping table [VS-1632] #5883

Triggered via pull request October 14, 2025 14:07
@mcovarrmcovarr
opened #9283
vs_1632_foxtrot_participant_mapping_table
Status Success
Total duration 45m 39s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
3s
check if the environment has privileges
build and push gatk docker to artifacts
13m 7s
build and push gatk docker to artifacts
Validate script WDLs using womtools
3m 50s
Validate script WDLs using womtools
Validate generated WDLs using womtools
15m 58s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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Annotations

7 errors and 5 warnings
cloud build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
unit test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
conda test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
variantcalling test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
integration test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
WDL test RUN_M2_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
WDL test RUN_CNV_SOMATIC_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Artifacts

Produced during runtime
Name Size Digest
gatkDockerImage
2.29 GB
sha256:356d571e868c8cbc9e1d0a78c04f83dad8917968de7c3c652b6be85972669625
test-results-17.0.6+10-cloud
86.9 KB
sha256:4b240522d8d9da96077aec63684a27063b4677669f4b8dc7a4f80de627f3a160
test-results-17.0.6+10-integration
577 KB
sha256:71691672a504935f2a82ca7c09e38d89fb6aab4ef6f28846e71bffb1e91f3aa2
test-results-17.0.6+10-unit
5.15 MB
sha256:238ef8b0c47eecba86225912e7accf94c91de68c9f725899c46017e03b92331b
test-results-docker-17.0.6+10-conda
59.5 KB
sha256:dbcd845b5d1514f8c2b0d1b581e959729d0faec5c790339b8f16a85aa4373091
test-results-docker-17.0.6+10-integration
580 KB
sha256:2a4a8fc22e78b24439c2b1560d6abc2b2f33adab8f1cae48b3d2d3da06cc3188
test-results-docker-17.0.6+10-unit
5.01 MB
sha256:8cce97364db86938fe961b12cc3996f0fa84455e9d28931ff5ee443de126f010
test-results-docker-17.0.6+10-variantcalling
31.7 KB
sha256:eceb54c3ee3a99133a5c42f221f2891b7007c226a7bf2701c61dddcf2ad65d20