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8279317
PhysicsModel: Call model outputMonitor before outputVars
bendudson Nov 14, 2023
3a6a02b
Options: assign, force, and assignRepeat return references
bendudson Nov 14, 2023
05e2e30
Orszag-Tang: Replace outputMonitor with outputVars
bendudson Nov 14, 2023
684ab2d
Apply clang-format changes
bendudson Nov 14, 2023
59c176b
blob2d: Add data and blob_velocity.py
bendudson Nov 14, 2023
273f5cf
blob2d: Use outputVars to write to output
bendudson Nov 14, 2023
018b039
gas-compress: Improvements, not fixed yet
bendudson Nov 15, 2023
ae2f74e
6field-simple: Fix BOUT.inp file
bendudson Nov 15, 2023
e01c7f5
Move datafiles to new folder
dschwoerer Nov 16, 2023
54e900d
Remove blob2d_legacy.py example
dschwoerer Nov 16, 2023
14b22ab
blob/BOUT.inp gets automatically created, so we do not need to keep t…
dschwoerer Nov 16, 2023
6c06663
Update name
dschwoerer Nov 16, 2023
2e44738
hasegawa-wakatani: Add outputVars
bendudson Nov 15, 2023
34950b5
examples/conducting-wall-mode tidying
bendudson Dec 4, 2023
e57389a
examples/dalf3 tidying
bendudson Dec 4, 2023
38c48b8
Apply clang-format changes
bendudson Dec 4, 2023
1589842
Move Zoidberg examples to Zoidberg repo
ZedThree Jan 18, 2024
a630622
Merge branch 'next' into fix-examples
ZedThree Jan 19, 2024
53729a6
Remove `backtrace` example, move into docs instead
ZedThree Jan 22, 2024
14f5c46
Update manual/sphinx/developer_docs/debugging.rst
bendudson Feb 8, 2024
55c3962
Update manual/sphinx/developer_docs/debugging.rst
bendudson Feb 8, 2024
de8b50d
Apply suggestions from code review
bendudson Feb 8, 2024
7be2be9
Merge pull request #2842 from boutproject/remove-backtrace-example
ZedThree Feb 14, 2024
cf966c8
Merge branch 'next' into fix-examples
dschwoerer Mar 14, 2024
5fe6896
Delete a bunch of old/unused models
ZedThree Sep 11, 2024
13f49eb
Merge branch 'next' into fix-examples
ZedThree Sep 12, 2024
2ff41ff
Add missing argument in call to writeDefaultOutputFile().
tomchapman Jun 7, 2024
e86a7cb
fci-wave example needs to include "bout/parallel_boundary_region.hxx".
tomchapman Jun 7, 2024
e4faaa8
Add missing argument in call to writeDefaultOutputFile().
tomchapman Jun 7, 2024
55d887c
Remove 'shim' header file - options_netcdf.hxx no longer exists.
tomchapman Jun 7, 2024
926b9b0
Use OptionsIOFactory instead of OptionsNetCDF for output_file.
tomchapman Jun 10, 2024
9b401b5
Fix "Use OptionsIOFactory instead of OptionsNetCDF for output_file".
tomchapman Aug 22, 2024
1c5387c
Use reference to Options (not a copy). Required since changes in bran…
tomchapman Jun 10, 2024
eecc813
Apply clang-format changes
tomc271 Aug 23, 2024
d72d11c
Fix examples/fci-wave (BoundaryRegionPar no longer has public fields …
tomchapman Sep 16, 2024
bfee7ae
Uncomment output_file->write(output) in examples/subsampling/monitor.cxx
tomchapman Sep 16, 2024
8e0d6e6
Revert change to reference for 'datadir'.
tomchapman Sep 16, 2024
6120ef2
Apply clang-format changes
tomchapman Sep 16, 2024
e78374b
Fix "call to deleted constructor of 'Options' [clang-diagnostic-error]"
tomchapman Sep 16, 2024
30ed12c
Merge pull request #2951 from boutproject/fix_examples_extra
ZedThree Sep 18, 2024
c692d7a
CI: Remove test of deleted example
ZedThree Sep 18, 2024
bb8f345
Fix some clang-tidy issues in dalf3
ZedThree Oct 23, 2024
627ecf0
Make function signature match implementation in example
ZedThree Oct 23, 2024
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13 changes: 0 additions & 13 deletions .ci_with_cmake.sh
Original file line number Diff line number Diff line change
Expand Up @@ -17,12 +17,6 @@ ctest --output-on-failure --timeout 300

export LD_LIBRARY_PATH=/home/runner/local/lib:$LD_LIBRARY_PATH

# Test bout-config basic functionallity
cd ../examples/make-script
PATH=../../build/bin:$PATH bout-config --all
PATH=../../build/bin:$PATH make
./test --help
cd -
# Test bout++Config.cmake
cd ../examples/conduction
cmake . -B build -DCMAKE_PREFIX_PATH=../../build
Expand All @@ -32,13 +26,6 @@ cd -

make install -j 2
rm -rf build
# Test installation with plain `make`
cd ../examples/make-script
rm test
PATH=../../installed/bin:$PATH bout-config --all
PATH=../../installed/bin:$PATH make
./test --help
cd -
# Test installation with CMake
cd ../examples/conduction
cmake . -B build -DCMAKE_PREFIX_PATH=../../installed
Expand Down
1 change: 0 additions & 1 deletion examples/2Dturbulence_multigrid/.gitignore

This file was deleted.

9 changes: 0 additions & 9 deletions examples/2Dturbulence_multigrid/CMakeLists.txt

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7 changes: 0 additions & 7 deletions examples/2Dturbulence_multigrid/README.md

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77 changes: 0 additions & 77 deletions examples/2Dturbulence_multigrid/data/BOUT.inp

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137 changes: 0 additions & 137 deletions examples/2Dturbulence_multigrid/esel.cxx

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15 changes: 0 additions & 15 deletions examples/2Dturbulence_multigrid/redistribute_restarts.py

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12 changes: 0 additions & 12 deletions examples/6field-simple/bout_hopper_debug.cmd

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4 changes: 0 additions & 4 deletions examples/6field-simple/data/BOUT.inp
Original file line number Diff line number Diff line change
Expand Up @@ -18,10 +18,6 @@ MXG = 2
MYG = 2

grid = "cbm18_dens8.grid_nx68ny64.nc"
restart_format = "nc" # Restart file format

[mesh]
staggergrids = false # Use staggered grids (EXPERIMENTAL)

[mesh:paralleltransform]
type = shifted # Use shifted metric method
Expand Down
14 changes: 0 additions & 14 deletions examples/CMakeLists.txt
Original file line number Diff line number Diff line change
@@ -1,13 +1,9 @@
add_subdirectory(2Dturbulence_multigrid)
add_subdirectory(6field-simple)
add_subdirectory(IMEX/advection-diffusion)
add_subdirectory(IMEX/advection-reaction)
add_subdirectory(IMEX/diffusion-nl)
add_subdirectory(IMEX/drift-wave)
add_subdirectory(IMEX/drift-wave-constraint)
add_subdirectory(advdiff)
add_subdirectory(advdiff2)
add_subdirectory(backtrace)
add_subdirectory(blob2d)
add_subdirectory(blob2d-outerloop)
add_subdirectory(blob2d-laplacexz)
Expand All @@ -22,32 +18,22 @@ add_subdirectory(dalf3)
add_subdirectory(eigen-box)
add_subdirectory(elm-pb)
add_subdirectory(elm-pb-outerloop)
add_subdirectory(em-drift)
add_subdirectory(fci-wave)
add_subdirectory(fci-wave-logn)
add_subdirectory(finite-volume/diffusion)
add_subdirectory(finite-volume/fluid)
add_subdirectory(finite-volume/test)
add_subdirectory(gas-compress)
add_subdirectory(gravity_reduced)
add_subdirectory(gyro-gem)
add_subdirectory(hasegawa-wakatani)
add_subdirectory(hasegawa-wakatani-3d)
add_subdirectory(invertable_operator)
add_subdirectory(jorek-compare)
add_subdirectory(lapd-drift)
add_subdirectory(laplacexy/alfven-wave)
add_subdirectory(laplacexy/laplace_perp)
add_subdirectory(laplacexy/simple)
add_subdirectory(laplacexy/simple-hypre)
add_subdirectory(monitor)
add_subdirectory(monitor-newapi)
add_subdirectory(orszag-tang)
add_subdirectory(preconditioning/wave)
add_subdirectory(reconnect-2field)
add_subdirectory(shear-alfven-wave)
add_subdirectory(staggered_grid)
add_subdirectory(subsampling)
add_subdirectory(tokamak-2fluid)
add_subdirectory(uedge-benchmark)
add_subdirectory(wave-slab)
1 change: 0 additions & 1 deletion examples/advdiff/.gitignore

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11 changes: 0 additions & 11 deletions examples/advdiff/CMakeLists.txt

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16 changes: 0 additions & 16 deletions examples/advdiff/README

This file was deleted.

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