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Pull requests: biobakery/humann

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Pull requests list

Fix MetaPhlAn link in Readme
#68 opened Aug 1, 2025 by simanjo Loading…
Update for MetaPhlAn 4.2 compatability
#67 opened Jun 7, 2025 by zzkt Loading…
1
Add support for a user config file
#65 opened Feb 21, 2025 by tonykew Loading…
typo in utils.py
#61 opened Apr 10, 2024 by SilasK Loading…
Check t__ only on rows with taxonomy
#43 opened Aug 4, 2022 by fasnicar Loading…
Available storage optimization for running HUMAnN at small lab
#42 opened May 26, 2022 by alienzj Loading…
1
More robustly parse metaphlan profile
#41 opened May 25, 2022 by alienzj Loading…
humann_genefamilies_genus_level: Fix a dictionary parsing and add functional test
#26 opened Apr 23, 2021 by bebatut Loading…
Lower peak memory usage with sqlite3
#21 opened Feb 11, 2021 by wbazant Loading…
2
Add --threads to bowtie-index command
#16 opened Aug 28, 2020 by aeschriefer Loading…
added diamond 2-pass
#11 opened Jul 19, 2020 by nick-youngblut Loading…
ProTip! What’s not been updated in a month: updated:<2025-07-16.