refactor: Update Ruff configuration and refactor codebase#68

Merged

jjjermiah merged 12 commits intomainfrom

jjjermiah/sandbox/feature-extraction-refactor

Dec 2, 2024

Commits on Dec 2, 2024

chore: copied ruff config from med-imagetools
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chore: update ruff configuration to include additional files and ignore specific PEP-8 naming conventions
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refactor: use pathlib instead of os.path, remove unused imports, improve logging verbosity, add type annotations, extract-functions to create context overhead
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chore: change quote style from single to double in ruff configuration
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refactor: improve docstring formatting and logging in feature extraction functions
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fix: remove unintentiaonal exclude of loaders.py
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fix: update pixi-version to v0.38.0 in CI/CD workflow
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fix: update pixi-version to v0.39.0 in CI/CD workflow
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fix: update saveDataframeCSV to accept Path type for outputFilePath
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temp ignore ruff
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fix: dont add .csv to path
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fix: update output file path structure for feature extraction
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