An image analysis pipeline for performing image alignment, nuclear instance segmentation, and morphological feature extraction from terabyte-scale lightsheet fluorescence microscopy images.

Gen 575: Fundamentals of Biomedical Instrumentation

Jekyll Template for Spatial Biology Website

A collection of downloadable resources accompanying the PaintSHOP application.

Tigerfish

A scalable machine learning pipeline for probe specificity prediction.

Shiny App for interactive oligo probe design.

Python scripts to segment/quantify smFISH spots and local proteome labeling from SABER and peroxidase-SABER microscopy images.

Support for WI 2023 GEN559