This repository includes notebooks utilized to produce results for the publication on the Tobemstomig in vivo Panc02 study (TIL scRNA-seq analysis): Single cell RNA-seq of Panc02-H7-Fluc model with vehicle, tobemstomig, nivolumab and relatlimab-like treatment.
- Cell annotation workflow (adapted from besca 2.5, based on scanpy, including exploratory analyses related to signature and marker gene expression
Underlying data can be retrieved from ArrayExpress, E-MTAB-15144