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Add column names in .tsv outputs

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#119 In bbglab/deepUMIcaller;

· bkohrn opened on Jul 19, 2025

Remove multiple confidence levels

Status: Open.

#117 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Jul 16, 2025

Create python container for deepUMIcaller

Status: Open.

#114 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Jun 3, 2025

Add step to check for interspecies contamination

Status: Open.

#111 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 24, 2025

Update containers

Status: Open.

#109 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 22, 2025

Update SigProfilerMatrixGenerator container

Status: Open.

#108 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 21, 2025

Report SSC mutation profile per base type separating purine and pyrimidine

Status: Open.

#104 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 15, 2025

Improve mutation QC reporting

Status: Open.

#103 In bbglab/deepUMIcaller;

· FerriolCalvet opened on May 15, 2025

Indel calling

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#91 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Mar 13, 2025

Improve memory usage (and maybe time as well)

Status: Open.

#85 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Jan 3, 2025

Optimize runtime: Split and Run

Highhigh priorityhigh priority

Status: Open.

Task

#84 In bbglab/deepUMIcaller;

· migrau opened on Dec 30, 2024

Partially created files are used for resume a run

bugSomething isn't workingSomething isn't working

on-hold

Status: Open.

#78 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Oct 30, 2024