- I'm a trained bioinformatician and currently a Senior Bioinformatics Scientist at the Bernard-Nocht Institute (BNI) for Tropical Medicine
- I integrate well-established NGS technologies for microbial & animal genome assembly and annotation;
- I use HPC for large scale data processing;
- I am R enthiast, which I primarily leverage for data cleaning, wrangling and visualization in the tidyverse ecosystem;
- I use BASH and python for scripting pipeline and reformatting data;
- Both Conda and Nextflow are good friends of mine;
- I leverage BASH and python for developing workflows;
- I advocate for reproducible research and open science by making my workflows and pipelines as transparent and reprocdicele as posible.
Senior Bioinformatics Scientist at Bernard-Nocht Institute for Tropical Medicine.
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Bernard-Nocht Institute for Tropical Medicine - Hamburg
- Hamburg
- https://www.bnitm.de/
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compleasm-batch-wrapper
compleasm-batch-wrapper PublicCompleasm Batch Runner for Genome Assembly Completeness Assessment (BUSCO)
Shell
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fluoroquinolone-AMR-campylobacter
fluoroquinolone-AMR-campylobacter PublicScripts, workflows, and results for analyzing quinolone and fluoroquinolone resistance in global Campylobacter isolates
Python
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