This repository uses other repositories which are included as git submodules.
By default git clone does not clone submodules recursively.
Use --recurse-submodules clone the repo with all included submodules e.g.
git clone --recurse-submodules https://github.com/proteinverse/slivka-bio-installer.git
If you have already cloned the repository without submodules then run
git submodule init && git submodule update
As a bare minimum, the installer requires python, click, ruamel.yaml and slivka. You can install all the dependencies with conda package manager:
conda create -n slivka-installer -c conda-forge python=3.10 click ruamel.yaml slivka::slivka
If you prefer the latest beta version of slivka then install slivka from the beta subdirectory
conda create -n slivka-installer -c conda-forge python=3.10 click ruamel.yaml slivka/label/beta::slivka
The installer uses conda and docker which need to be available for proper functiononing.
Move to the directory where you cloned the installer repository and run:
python install.py <PATH>
subsituting the project destination for <PATH>. The installer will display the list of tools that will be installed and prompt for the installation method for each one of them. If the installation fails, you will be prompted to retry, skip the installation of that service, abort and stop the installer or ignore the error and proceed with the installation.