Bailey Lab
- 16 followers
- Providence, RI
- http://www.baileylab.org/
- @baileygenomics
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Repositories
- MIPWrangler Public
Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results
bailey-lab/MIPWrangler’s past year of commit activity - compilerProfiler Public
C++ library with an aligner to test different compiler speeds with different optimizations
bailey-lab/compilerProfiler’s past year of commit activity - haplotype_variant_calling Public
uses Nick Hathaway's variantCallOnSeqAndProtein script to call variants on vcf files and generate prevalences and amino acid calls
bailey-lab/haplotype_variant_calling’s past year of commit activity - count_undetermined_sample_barcodes Public
when demultiplexing fails, we need the ability to figure out which sample barcodes were present and in what abundances. This allows us to figure out if the 'wrong' barcodes were applied to the samples or if the barcoding failed.
bailey-lab/count_undetermined_sample_barcodes’s past year of commit activity - nano_mamp_pipes Public
NanoMAMP Pipes is a free-to-use one-step automated pipeline designed for comprehensive analysis of molecular inversion probe and amplicon sequencing data from Nanopore platforms.
bailey-lab/nano_mamp_pipes’s past year of commit activity - MIPTools Public
A suite of computational tools used for molecular inversion probe design, data processing, and analysis.
bailey-lab/MIPTools’s past year of commit activity - map_fastqs_snakemake Public
a snakemake pipeline for mapping fastq entries to a bowtie2 indexed reference genome
bailey-lab/map_fastqs_snakemake’s past year of commit activity
