Update dependencies post release

[kmcginnes]

Description

• Update all dependencies to latest (except Zod & Tailwind due to heavy migration)
• Update to React 19.2 and React Compiler 1.0
  • Introduced some new lint issues
  • Fixed issues that were simple fixes
  • Disabled lint rule for older more brittle code
• Update to latest Tailwind Prettier plugin introduced some formatting changes
  • Auto fix for format issues
• Remove deprecated and unused @types/cytoscape and @types/uuid
• Update to Vitest v4 which changed how mocking works
  • Added additional mock reset to ensure tests start clean

Validation

• Suggest reviewing commit by commit
• Smoke test
• Ran all checks, including coverage

Related Issues

• Resolves Update all dependencies post release #1235

Check List

• I confirm that my contribution is made under the terms of the Apache 2.0
  license.
• I have run pnpm checks to ensure code compiles and meets standards.
• I have run pnpm test to check if all tests are passing.
• I have covered new added functionality with unit tests if necessary.
• I have added an entry in the Changelog.md.