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  1. selfies selfies Public

    Robust representation of semantically constrained graphs, in particular for molecules in chemistry

    Python 778 134

  2. chemical_vae chemical_vae Public

    Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

    Python 525 189

  3. stoned-selfies stoned-selfies Public

    This repository contains code for the paper: Beyond Generative Models: Superfast Traversal, Optimization, Novelty, Exploration and Discovery (STONED) Algorithm for Molecules using SELFIES

    Jupyter Notebook 129 39

  4. ORGANIC ORGANIC Public

    Code repo for optimizing distributions of molecules.

    Jupyter Notebook 127 65

  5. GA GA Public

    Code for the paper: Augmenting genetic algorithms with deep neural networks for exploring the chemical space

    Python 110 37

  6. phoenics phoenics Public

    Phoenics: Bayesian optimization for efficient experiment planning

    Python 93 20

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  • TreeReader Public
    aspuru-guzik-group/TreeReader’s past year of commit activity
    2 0 0 0 Updated Jul 24, 2025
  • MERMaid Public

    Multimodal aid for mining of chemical reactions from PDFs

    aspuru-guzik-group/MERMaid’s past year of commit activity
    Python 23 MIT 5 0 0 Updated Jun 25, 2025
  • atlas-unknown-constraints Public

    Unknown constraints in Bayesian optimization benchmark with Atlas

    aspuru-guzik-group/atlas-unknown-constraints’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated May 30, 2025
  • atlas Public

    A brain for self-driving laboratories

    aspuru-guzik-group/atlas’s past year of commit activity
    Python 41 MIT 12 1 0 Updated May 21, 2025
  • selfies Public

    Robust representation of semantically constrained graphs, in particular for molecules in chemistry

    aspuru-guzik-group/selfies’s past year of commit activity
    Python 778 Apache-2.0 134 4 2 Updated May 17, 2025
  • Tartarus Public

    A Benchmarking Platform for Realistic And Practical Inverse Molecular Design

    aspuru-guzik-group/Tartarus’s past year of commit activity
    Python 77 8 2 0 Updated May 11, 2025
  • stiefelFM Public

    Code for "Stiefel Flow Matching for Moment-Constrained Structure Elucidation"

    aspuru-guzik-group/stiefelFM’s past year of commit activity
    Jupyter Notebook 11 MIT 0 0 0 Updated Apr 23, 2025
  • ReprNet Public

    Build Representation Network with Python

    aspuru-guzik-group/ReprNet’s past year of commit activity
    Python 1 0 2 0 Updated Apr 11, 2025
  • qcbm Public
    aspuru-guzik-group/qcbm’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 2 0 0 Updated Mar 17, 2025
  • Rational-design-of-organic-molecules-with-inverted-gaps Public

    Code and data for "Rational Design of Organic Molecules with Inverted Gaps between First Excited Singlet and Triplet".

    aspuru-guzik-group/Rational-design-of-organic-molecules-with-inverted-gaps’s past year of commit activity
    2 0 0 0 Updated Jan 16, 2025