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asomohammed/README.md

Aso Omer Mohammed

Welcome to my GitHub! I am a PhD student specializing in Cancer Neuroscience, focusing on Glioblastoma Immunology and Transcriptomics. I am a lightweight programmer primarily engaged in wet lab work. This github page serves as a platform to share my research, code, and findings related to my studies and projects.

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🔬 Research Interests

  • Glioblastoma Immunology: Investigating the immune landscape of glioblastoma tumors and exploring potential immunotherapeutic strategies.
  • Immunotherapy: Researching novel approaches to enhance immune responses against cancer.
  • CAR T Development: Developing and optimizing CAR T-cell therapies for targeted cancer treatment.
  • Single-Cell and Spatial Transcriptomics: Analyzing gene expression at single-cell resolution and spatial context to understand tumor microenvironments.
  • Transcriptomics: Analyzing gene expression profiles to uncover molecular mechanisms driving glioblastoma progression and treatment resistance.

💻 Programming Skills

Proficient in:

Python R Bash C

Currently Learning:

JavaScript SQL Julia

🔧 Additional Skills

  • Bioinformatics Tools:

    • Geneious Geneious
    • MEGA MEGA
    • BLAST BLAST

  • Bio-imaging Tools:

    • ImageJ ImageJ
    • Ilastik Ilastik
    • QuPath QuPath
    • CellProfiler CellProfiler

  • Operating Systems:

    • Linux Linux

Pinned Loading

  1. Fastq-combiner Fastq-combiner Public

    FASTQ file combiner

    Python 1

  2. Universal-Read-Recovery-Tool Universal-Read-Recovery-Tool Public

    A powerful Python tool for recovering misassigned reads from Illumina sequencing demultiplexing, specifically designed to rescue reads that were incorrectly placed in the "Unassigned" or "Undetermi…

    Python 1