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  1. svs2tif-converter svs2tif-converter Public

    A useful python based tool to convert .svs to .tif file. Currently there is an issue with the Bioformats importer in FIJI as a result it is not possible to convert the .svs file to .tif file. This …

    Jupyter Notebook

  2. LIVR-HPC-Containers LIVR-HPC-Containers Public

  3. HPC-Organoid-Quant HPC-Organoid-Quant Public

    HPC-Organoid-Quant is a modular image analysis pipeline for quantifying organoids in brightfield microscopy images, with optional GFP analysis. It handles fragmented structures, extracts key featur…

    Jupyter Notebook