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[REF] Support SPM25 for pet-volume #1547

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[REF] Support SPM25 for pet-volume #1547

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Modify doc
AliceJoubert Sep 17, 2025
5b2a7ee
Modify info to version > 25
AliceJoubert Sep 17, 2025
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2 changes: 1 addition & 1 deletion clinica/pipelines/pet/volume/info.json
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Expand Up @@ -8,7 +8,7 @@
{
"type": "software",
"name": "spm",
"version": ">=12"
"version": ">=25"
}
]
}
2 changes: 1 addition & 1 deletion docs/Pipelines/PET_Volume.md
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Expand Up @@ -23,7 +23,7 @@ You need to have performed the [`t1-volume`](./T1_Volume.md) pipeline on your T1

## Dependencies

If you only installed the core of Clinica, this pipeline needs the installation of either [SPM12](../Software/Third-party.md#spm12) and [Matlab](../Software/Third-party.md#matlab), or [spm standalone](../Software/Third-party.md#spm12-standalone).
If you only installed the core of Clinica, this pipeline needs the installation of [SPM standalone](../Software/Third-party.md#spm12-standalone).

In addition, if you want to apply partial volume correction (PVC) on your PET data, you will need to install [PETPVC 1.2.4](../Software/Third-party.md#petpvc), which depends on [ITK 4](../Software/Third-party.md#itk).

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2 changes: 1 addition & 1 deletion docs/Software/Third-party.md
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Expand Up @@ -287,7 +287,7 @@ If you want to install `SPM12` without installing [Matlab](#matlab), you will ne

!!! danger "Which version to use ?"
SPM has recently released a version `SPM25` on Github for which the installation is described [here](https://www.fil.ion.ucl.ac.uk/spm/docs/installation/standalone/).
Clinica does not support this version yet. If you want to use pipelines relying on SPM please use SPM12.
Clinica does support this version for both `t1-volume` and `pet-volume`

!!! tip "Verify your environment variables"
If you followed the installation instructions, you should have set the environment variable `$LD_LIBRARY_PATH` on Linux, or `$DYLD_LIBRARY_PATH` on MacOS.
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6 changes: 3 additions & 3 deletions test/unittests/pipelines/pet/test_pet_volume_pipeline.py
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Expand Up @@ -16,7 +16,7 @@ def test_pet_volume_info_loading(tmp_path):
"version": "0.1.0",
"space_caps": "55M",
"space_wd": "245M",
"dependencies": [{"type": "software", "name": "spm", "version": ">=12"}],
"dependencies": [{"type": "software", "name": "spm", "version": ">=25"}],
}


Expand All @@ -29,7 +29,7 @@ def test_pet_volume_dependencies(tmp_path, mocker):

mocker.patch(
"clinica.utils.check_dependency._get_spm_version",
return_value=Version("12.7219"),
return_value=Version("25.7219"),
)
bids = build_bids_directory(tmp_path / "bids", {"sub-01": ["ses-M00"]})
caps = tmp_path / "caps"
Expand All @@ -39,6 +39,6 @@ def test_pet_volume_dependencies(tmp_path, mocker):

assert pipeline.dependencies == [
SoftwareDependency(
ThirdPartySoftware.SPM, SpecifierSet(">=12"), Version("12.7219")
ThirdPartySoftware.SPM, SpecifierSet(">=25"), Version("25.7219")
)
]
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