Cohort360 meta repository

Quick start

Get the code

Start by cloning this repository from a stable release tag:

git clone --depth 1 --branch <some-release-tag> https://github.com/aphp/Cohort360.git

Fetch the corresponding submodules repositories:

git submodule update --init --recursive --remote

Spin it up

Generate fake data with Synthea (for first time execution)

docker compose -f docker-compose.yaml -f docker-compose.fakedata.yaml up

Track fake data generation

Soon after you can go to http://localhost:8080 to check up the initialization progress

it may be very long if a lot of fake data patients are generated (default 200 records).

Run without generating fake data (for later executions)

docker compose --env-file .env up

About fake data

The base instance contains no data you can use Synthea to generate some fake data and upload them to the FHIR instance.

After adding new organizations in FHIR, you must manually synchronize them in the backend of the application, for that:

• Go to http://localhost:8000/docs default URL of the Django backend application
• Login to acquire an access token using the endpoint /auth/login/
• Make a request to the endpoint PUT /fhir-perimeters/_sync/

You should then have the patient data and organization available in the application.

The current Docker Compose sets up an initialization Docker to populate the data it will proceed to generate data with Synthea (using a quick fixed fork) and synchronize the perimeters.

Give it a try

Then you can visit different applications with the following URLs:

• Main Cohort360 app : http://localhost:9808
• Administration Portal app : http://localhost:9807

(i) The default credentials are admin:admin