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[INFRASTRUCTURE] Updated VDJdb confidence scoring system
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@mikessh mikessh released this 08 Jul 10:59
· 532 commits to master since this release
2016-07-08
5879a50

Improvements

  • Completely reworked VDJdb confidence scoring (a more transparent record confidence system)
    • Four confidence levels: 0 (no data), 1 (moderate), 2 (high) and 3 (very high confidence)
    • Now accounts for both sequencing and specificity
    • Changed how identification and in-vitro validation methodology is score, extensively validated records have the highest score
  • Added several new method annotations
  • More flexible parsing of method.frequency (x/X is now optional)
  • Small update to patches (replacement of typos and formatting issues in gene and species naming)

See README for more details and additional guidelines.

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