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1. AllenInstitute/deep-neurographs AllenInstitute/deep-neurographs Public

   A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.

   Python 6

2. AllenNeuralDynamics/segmentation-skeleton-metrics AllenNeuralDynamics/segmentation-skeleton-metrics Public

   A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

   Python 8

3. AllenNeuralDynamics/aind-exaspim-soma-detection AllenNeuralDynamics/aind-exaspim-soma-detection Public

   A Python package for detecting somas in ExaSPIM image datasets. Includes tools for image preprocessing and deep learning-based classification and training.

   Jupyter Notebook 3

4. AllenNeuralDynamics/supervoxel-loss AllenNeuralDynamics/supervoxel-loss Public

   Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

   Python 5 2

5. AllenNeuralDynamics/aind-exaspim-image-compression AllenNeuralDynamics/aind-exaspim-image-compression Public

   A Python package for compressing ExaSPIM image datasets via denoising and lossy compression.

   Python 1