1.0.0

Breaking changes

• Removed -f/--file and allowed direct file input

Enhancements

• None

Maintenance Updates

• Validated that no errors occur with real BAM files
  • If an error occurred, modified to output the query_name of the read that caused the error
  • Confirmed visualizability in IGV
• Fixed the bug where the program would hang when input was empty
  • Modified to display a help message using the select module when there is no IO
• Aligned supported Operating Systems with Pysam
  • POSIX, Unix, MacOS

• Added COC (Code of Conduct)
• Added GitHub Issue templates (bug and feature)
• pysam -> bamnostic (failed)
  • We've decided to continue using Pysam, as Bamnostic was unable to convert SAM to AlignmentFile format
• Changed the build backend in pyproject.toml from setuptools to poetry
  • As homepage wasn't reflected in grayskull's meta.yaml when using setuptools
• Translate all Japanese to English

0.1.1

• maintenance release
  • change args of append(is_long) to long for cstag v0.5.1
  • add typehints
  • add python requirements >= 3.7

0.1.0

• add cstag append command
• upload to pypi and bioconda
• connect to zotero