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Binary file modified _cite/.cache/cache.db
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17 changes: 17 additions & 0 deletions _data/citations.yaml
Original file line number Diff line number Diff line change
@@ -1,5 +1,22 @@
# DO NOT EDIT, GENERATED AUTOMATICALLY

- id: doi:10.1101/2025.06.19.660613
title: Scalable data harmonization for single-cell image-based profiling with CytoTable
authors:
- Dave Bunten
- Jenna Tomkinson
- Erik Serrano
- Michael J. Lippincott
- Kenneth I. Brewer
- Vince Rubinetti
- Faisal Alquaddoomi
- Gregory P. Way
publisher: Cold Spring Harbor Laboratory
date: '2025-06-25'
link: https://doi.org/g9rfr3
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1093/nar/gkad1082
title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\
\ genes\_and diseases across species"
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39 changes: 32 additions & 7 deletions _data/members.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -37,6 +37,7 @@
image: /images/team/others/Charlene.png
url:
badges: [Robotics]
status: alumnus

- name: Nguyen NGUYEN
name_jp: Nguyen Nguyen
Expand All @@ -53,6 +54,8 @@
url: https://thuanbb.github.io/
badges: [CV, SLAM]
date: 2022-09-01
status: alumnus
alumnus_date: 2025-03-20

- name: Ardiansyah Al FAROUQ
name_jp: Ardiansyah Al Farouq
Expand Down Expand Up @@ -94,6 +97,8 @@
url:
badges: [iSpace]
date: 2023-09-01
status: alumnus
alumnus_date: 2025-03-20

- name: Quang Tien DAM
name_jp: Quang Tien Dam
Expand All @@ -102,6 +107,8 @@
url:
badges: [CV, Generative]
date: 2023-09-01
status: alumnus
alumnus_date: 2025-03-20

- name: Huy Hoang BUI
name_jp: Huy Hoang Bui
Expand All @@ -110,6 +117,8 @@
url:
badges: [CV, SLAM]
date: 2023-09-01
status: alumnus
alumnus_date: 2025-03-20

- name: Yuki ENDO
name_jp: 遠藤 優貴
Expand Down Expand Up @@ -247,13 +256,29 @@
badges: [CV]
date: 2025-04-01

- name: HAI DUONG TRAN
name_jp: HAI DUONG TRAN
role: m
image: /images/team/master/Duong.jpg
url:
badges: [Robotics, RL]
date: 2025-09-01

- name: Ansh Pandey
name_jp: Ansh Pandey
role: m
image: /images/team/dummy.png
url:
badges:
date: 2025-09-01

# Bachelor students (b)
- name: Sogo ARAKI
name_jp: 荒木 颯吾
role: b
image: /images/team/bachelor/araki.jpg
url:
badges: []
badges: [Robotics]
date: 2022-04-01

- name: Izuru IPPITSU
Expand All @@ -277,15 +302,15 @@
role: b
image: /images/team/bachelor/katou.jpg
url:
badges: []
badges: [CaTARo]
date: 2022-04-01

- name: Hibiki TAKAI
name_jp: 高井 日美暉
role: b
image: /images/team/bachelor/takai.jpg
url:
badges: []
badges: [Speech]
date: 2022-04-01

- name: Haruki TSUKA
Expand All @@ -301,23 +326,23 @@
role: b
image: /images/team/bachelor/hirosawa.jpg
url:
badges: []
badges: [MAPF]
date: 2022-04-01

- name: Aina FUJII
name_jp: 藤井 愛奈
role: b
image: /images/team/bachelor/fujii.jpg
url:
badges: []
badges: [Robotics, R+iSpace]
date: 2022-04-01

- name: Asahi FUMIMOTO
name_jp: 文元 朝陽
role: b
image: /images/team/bachelor/fumimoto.jpg
url:
badges: []
badges: [CV, SLAM]
date: 2022-04-01

- name: Ai MITSUSHIMA
Expand Down Expand Up @@ -349,5 +374,5 @@
role: b
image: /images/team/bachelor/ryuu.png
url:
badges: []
badges: [Robotics]
date: 2022-09-01
41 changes: 41 additions & 0 deletions _includes/alumni_list.html
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@@ -0,0 +1,41 @@
{%- assign alumni = site.data.members | where: "status", "alumnus" -%}
{%- assign alumni_by_year = alumni | group_by_exp: "item", "item.alumnus_date | date: '%Y'" | sort: "name" | reverse -%}

{%- for year_group in alumni_by_year -%}

<h2>{{ year_group.name }}</h2>
{%- assign year_members = year_group.items -%}

<div class="alumni-role-group">
{%- assign phds = year_members | where: "role", "phd" | sort: "name" -%}
{%- if phds.size > 0 -%}
<p>
<strong>D: </strong>
{%- for member in phds -%}
{{ member.name }}{%- unless forloop.last -%}, {%- endunless -%}
{%- endfor -%}
</p>
{%- endif -%}

{%- assign masters = year_members | where: "role", "m" | sort: "name" -%}
{%- if masters.size > 0 -%}
<p>
<strong>M: </strong>
{%- for member in masters -%}
{{ member.name }}{%- unless forloop.last -%}, {%- endunless -%}
{%- endfor -%}
</p>
{%- endif -%}

{%- assign bachelors = year_members | where: "role", "b" | sort: "name" -%}
{%- if bachelors.size > 0 -%}
<p>
<strong>B: </strong>
{%- for member in bachelors -%}
{{ member.name }}{%- unless forloop.last -%}, {%- endunless -%}
{%- endfor -%}
</p>
{%- endif -%}
</div>

{%- endfor -%}
103 changes: 103 additions & 0 deletions _includes/list.html
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Expand Up @@ -2,9 +2,112 @@
{% assign data = site.data[include.data]
| default: site[include.data]
| default: emptyarray
| where_exp: "item", "item.status != 'alumnus'"
| data_filter: include.filter
%}
{% assign current_members = alldata | where_exp: "item", "item.status != 'alumnus'" %}
{% assign alumni = alldata | where: "status", "alumnus" %}

{% if cuurent_members.size > 0 %}
{% if include.year_asc %}
{% assign years = data
| group_by_exp: "d", "d.date | date: '%Y'"
| sort: "name"
%}
{% else %}
{% assign years = data
| group_by_exp: "d", "d.date | date: '%Y'"
| sort: "name"
| reverse
%}
{% endif %}

{% for year in years %}
{% assign data = year.items %}

{% if include.group_by_year and years.size > 1 %}
{{--}}<h3 id="{{ year.name }}">{{ year.name }}</h3>
{% assign data = data | sort: "date" | reverse %}
{% endif %}

{% for d in data %}
{% assign style = d.style | default: include.style %}
{% if site.lang == "jp" %}
{%
include {{ include.component | append: ".html" }}
affiliation=d.affiliation
author=d.author
authors=d.authors
buttons=d.buttons
caption=d.caption
content=d.content
date=d.date
description=d.description_jp
excerpt=d.excerpt
height=d.height
icon=d.icon
id=d.id
image=d.image
last_modified_at=d.last_modified_at
link=d.link
lookup=d.lookup
name=d.name
name_jp=d.name_jp
publisher=d.publisher
repo=d.repo
role=d.role
slug=d.slug
style=style
subtitle=d.subtitle
tags=d.tags
text=d.text
title=d.title
tooltip=d.tooltip
type=d.type
url=d.url
width=d.width
badges=d.badges
%}
{% else %}
{%
include {{ include.component | append: ".html" }}
affiliation=d.affiliation
author=d.author
authors=d.authors
buttons=d.buttons
caption=d.caption
content=d.content
date=d.date
description=d.description
excerpt=d.excerpt
height=d.height
icon=d.icon
id=d.id
image=d.image
last_modified_at=d.last_modified_at
link=d.link
lookup=d.lookup
name=d.name
name_jp=d.name_jp
publisher=d.publisher
repo=d.repo
role=d.role
slug=d.slug
style=style
subtitle=d.subtitle
tags=d.tags
text=d.text
title=d.title
tooltip=d.tooltip
type=d.type
url=d.url
width=d.width
badges=d.badges
%}
{% endif %}
{% endfor %}
{% endfor %}
{% endif %}
{% if include.year_asc %}
{% assign years = data
| group_by_exp: "d", "d.date | date: '%Y'"
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2 changes: 2 additions & 0 deletions team/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -32,6 +32,8 @@ nav:

# Alumni

{% include alumni_list.html %}

{% include section.html %}

{% capture content %}
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