Project Setup and Usage

Directory Structure

After cloning this repository, you need to set up the following directory structure:

PharmLLM/
├── dataset/
│   ├── raw/
│   │   ├── drug-label-0001-of-0012.json
│   │   ├── drug-label-0002-of-0012.json
│   │   └── ... (additional JSON files)
├── main.py
├── .gitignore
├── readme.md

Steps to Set Up

1. Clone the Repository

   git clone https://github.com/adnanul-islam-jisun/PharmLLM
   cd PharmLLM

2. Download the Dataset Visit FDA Open Data Downloads to download the required dataset.

   • Extract the ZIP file after downloading.
   • Place the .json files (e.g., drug-label-0001-of-0012.json, drug-label-0002-of-0012.json) inside the dataset/raw/ directory.

3. Create the Directory Tree Run the following commands to set up the required directories:

   mkdir -p dataset/raw

4. Add JSON Files Place your extracted JSON files inside the dataset/raw/ directory.

5. Verify the Structure Use the tree command or manually check to ensure the directory structure matches:

   tree

   Output should look like:

   .
   ├── dataset/
   │   ├── raw/
   │   │   ├── drug-label-0001-of-0012.json
   │   │   ├── drug-label-0002-of-0012.json
   │   │   └── ...
   ├── main.py
   ├── .gitignore
   ├── readme.md
   

Running the Script

1. Ensure You Have Python Installed Make sure Python is installed on your machine (version 3.7 or higher).

2. Run the Script Execute the main.py script:

   python main.py

Notes

• Ensure all required JSON files are present in the dataset/raw/ directory before running the script.
• If there are any errors, please check that the directory structure and file paths match the setup instructions.

Contact

For any queries, please contact us at msayeedi212049@bscse.uiu.ac.bd