LORIS-MRI Release v24.1.15

This is a bug fix release for LORIS-MRI version 24.1 that includes the following features:

• support for partial dataset ingestion in bids_import.py
• support in bids_import.py to ingest datasets without copying files in assembly_bids for cases where the datasets are already in assembly_bids
• new script ingest_eeg_bids_datasets.py to ingest all EEG uploads with status extracted

To import partial datasets:

python extract_eeg_bids_archive.py -p database_config.py
python bids_import.py -p database_config.py -d  /data/loris/data/assembly_bids/sub-<label>/ses-<label>/eeg --nobidsvalidation --type raw --nocopy

Notes: the --nocopy option is required for partial datasets since the process to create a copy in assembly_bids requires a dataset_description.json file.

bids_import.py new options:

• --nobidsvalidation: disable validation for datasets without a dataset_description.json (partial import). Required for partial ingestion.
• --nocopy: disable dataset copy in data assembly_bids
• --type: specify the dataset type for datasets without a dataset_description.json (partial import)

If you are going to use this pipeline, please contact us.