Fix lints in bidsreader.py
#74
Workflow file for this run
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| name: LORIS Test Suite | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| docker: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| testsuite: ['integration'] | |
| php: ['8.1','8.2', '8.3'] | |
| ci_node_index: [0] | |
| include: | |
| # add a variable but do not display it in the job's name | |
| - ci_node_total: 1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup PHP | |
| uses: shivammathur/setup-php@v2 | |
| with: | |
| php-version: ${{ matrix.php }} | |
| extensions: zip, php-ast | |
| - name: Clone Loris repo | |
| run: git clone https://github.com/aces/Loris.git | |
| - name: Override Test Files | |
| run: | | |
| cp test/Dockerfile.test.php8 Loris/ | |
| cp test/docker-compose.yml Loris/ | |
| cp test/phpunit.xml Loris/test/ | |
| cp test/RB_SQL/* Loris/raisinbread/RB_files/ | |
| - name: Validate composer.json and composer.lock | |
| run: | | |
| cd Loris | |
| composer validate | |
| - name: Cache Composer packages | |
| id: composer-cache | |
| run: | | |
| cd Loris | |
| echo "::set-output name=dir::$(composer config cache-files-dir)" | |
| - name: Composer cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ steps.composer-cache.outputs.dir }} | |
| key: ${{ runner.os }}-composer-${{ hashFiles('Loris/composer.lock') }} | |
| restore-keys: ${{ runner.os }}-composer- | |
| - name: Change PHP Version in Dockerfile | |
| run: | | |
| cd Loris | |
| sed -i "s/8.0/${{ matrix.php }}/g" Dockerfile.test.php8 | |
| - name: Install package dependencies | |
| run: | | |
| sudo apt install -y imagemagick-6-common libmagickcore-6.q16-6 libmagickwand-6.q16-6 \ | |
| libprotobuf-dev libprotobuf23 libprotoc23 protobuf-compiler | |
| cd Loris/modules/electrophysiology_browser/jsx/react-series-data-viewer/ | |
| protoc protocol-buffers/chunk.proto --js_out=import_style=commonjs,binary:./src/ | |
| - name: Install composer dependencies | |
| if: steps.composer-cache.outputs.cache-hit != 'true' | |
| run: | | |
| cd Loris | |
| composer install --prefer-dist --no-progress --no-suggest | |
| - name: Build LORIS | |
| run: | | |
| cd Loris | |
| make dev | |
| - name: Run Test Suite | |
| run: | | |
| # set sandbox to 1 before running the tests | |
| # since some tests only run in sandbox environments | |
| sed -i 's/<sandbox>0<\/sandbox>/<sandbox>1<\/sandbox>/g' Loris/test/config.xml | |
| cd Loris | |
| npm run tests:${{ matrix.testsuite }} | |
| env: | |
| # Specifies how many jobs you would like to run in parallel, | |
| CI_NODE_TOTAL: ${{ matrix.ci_node_total }} | |
| # Use the index from matrix as an environment variable | |
| CI_NODE_INDEX: ${{ matrix.ci_node_index }} |