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First bunch of python code improvements #170

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First bunch of python code improvements

First bunch of python code improvements #170

Run time

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Job Run time
🚧 Build SPAdes
1m 36s
Multicell B.cereus TruSeq 100x
4m 59s
Nextera L.monocytogenes
1m 13s
Full run M.ruber JGI lane 9
5m 29s
Mate-pairs B.faecium
2m 24s
PacBio M.ruber
4m 25s
Single-cell P.heparinus JGI lane 7
2m 53s
Saves E.coli 100K
54s
plasmidSPAdes C.callunae
7m 8s
Single reads E.coli Deeptrench
1m 48s
Saves E.coli UCSD lane 1
9m 12s
metaviralSPAdes ERR525599
15m 17s
metaSPAdes JGI 150
14m 28s
Contigs E.coli JGI lane 7
4m 7s
IonTorrent E.coli K12
29m 34s
1h 45m 27s