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Use customed lrpairs
Shao, Xin edited this page Apr 6, 2022
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1 revision
Please follow the structure and colnames of lrpairs or demo_lrpairs() as follows:
# lrpairs is a data.frame object with 3 columns
| ligand | receptor | species |
|---|---|---|
| CX3CL1 | CX3CR1 | Human |
| TGFB1 | TGFBR2 | Human |
| CCL2 | CCR2 | Human |
| Sst | Sstr1 | Mouse |
Replace the lrpairs with lrpairs_custom in the function of find_lr_path() to infer cell-cell communications
find_lr_path(object, lrpairs = lrpairs_custom, pathways, max_hop)