SWChen---A program for RNA interaction analysis
The Smith-Waterman algorithm is a local sequence alignment algorithm to identify similar regions between two nucleotide or protein sequences. We acquire the interactional region between miRNA and lncRNA by Smith-Waterman algorithm and the principle of complementary base pairing. By this method, the binding probability of RNAs can be predicted to screen interesting lncRNAs, miRNAs or circRNAs.
https://github.com/YLCHEN1992/SWChen/blob/main/SWChen%202021.R
Execute code：SWChen(target sequence.csv,data sequence.csv,default value=rv(RNA interaction score)【other including s\smi\mis\hair】) Program Annotation: in file History Version: The lastest version: SWChen 3.20 Other Version... ...
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https://ylchen-swchen.lofter.com/post/4b6b96bc_1cafbff94
Contact me: 1361697944@qq.com
ORCID iD:0000-0001-9697-5088