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nthread doesn't seem to work when prep step was run on FASTQ

Status: Open.

#519 In Xinglab/rmats-turbo;

· seung2323 opened on Jul 31, 2025

Inclusion counts and Skipping counts

Status: Open.

#518 In Xinglab/rmats-turbo;

· ZED-rookie opened on Jul 18, 2025

Guidance on Selecting --readLength for Combined Cohort Analysis in rMATS

Status: Open.

#517 In Xinglab/rmats-turbo;

· seung2323 opened on Jul 17, 2025

Paired tests not significant but unpaired significant

Status: Open.

#516 In Xinglab/rmats-turbo;

· sitems opened on Jul 12, 2025

WARNING: A .rmats file was found with no bams listed in it.

Status: Open.

#515 In Xinglab/rmats-turbo;

· Vivimins opened on Jul 11, 2025

exon_not_matched_to_annotation account too much

Status: Open.

#514 In Xinglab/rmats-turbo;

· yutaixian opened on Jul 10, 2025

run in HPC job killed

Status: Open.

#513 In Xinglab/rmats-turbo;

· yinbinqiu opened on Jul 10, 2025

Bug Report: rMATS Reports MXE Events Not Supported by Splice Junctions in BAM Files or by Junctions Annotated in the GTF File

Status: Open.

#512 In Xinglab/rmats-turbo;

· santataRU opened on Jul 7, 2025

Issue with -t paired for Paired Read Data

Status: Open.

#510 In Xinglab/rmats-turbo;

· guptas2005 opened on Jul 2, 2025

Aligned.sortedByCoord.out.bam File

Status: Open.

#509 In Xinglab/rmats-turbo;

· isaiao01 opened on Jun 24, 2025

Sequencing Depth Issue

Status: Open.

#507 In Xinglab/rmats-turbo;

· SUSTech-DD opened on Jun 20, 2025

When using rmats4.3.0, if NA appears in either of the two groups, p-value=1,FDR=1

Status: Open.

#506 In Xinglab/rmats-turbo;

· GQQ777592 opened on Jun 13, 2025